Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0105
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    27   8.9  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical
           protein T25F10.3 protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 430 GTTSIKRLDTRTLSYVAAGNYIPDP 356
           GTT+I R D R L +VAAG   P P
Sbjct: 316 GTTTISRDDIRILPFVAAGIQPPPP 340


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 360 ILRTEWKAVDGRPKHVISDPPDPLTVL 280
           ++R+E KA+D  P  +ISDP   L  L
Sbjct: 141 VMRSEPKAIDRTPSTIISDPAPVLKAL 167


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 27/77 (35%), Positives = 37/77 (48%)
 Frame = +2

Query: 236  ATGSTRR*PVLEVPKSTVSGSGGSEMTCFGRPSTAFHSVRRIGNVVTGGHI*EGSRVEPL 415
            +TGST    +LE   STVS S GS +T     STA  S     +  T   +  GS    +
Sbjct: 1135 STGSTGESTILESSVSTVSVSTGSTIT---DGSTASRSSVSTVSASTESTVSGGSSAS-I 1190

Query: 416  YRSGTNNTTRSMTSGSS 466
              + T ++T S  SGS+
Sbjct: 1191 GSTNTPDSTESTISGST 1207


>Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical
           protein F19C6.2b protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 320 FGRPSTAFHSVRRIGNVVTGGHI*EGSRVEPLYRSGTNNTTRSMTSGSSKQANIKASK 493
           FG P +A H  +   ++VTG H+ E  ++  +    T+N     +      +N K +K
Sbjct: 257 FGSPQSATHLYQCAKSLVTGNHVQECRKIF-VDEGSTSNRESDCSGNEDDSSNAKYAK 313


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 320 FGRPSTAFHSVRRIGNVVTGGHI*EGSRVEPLYRSGTNNTTRSMTSGSSKQANIKASK 493
           FG P +A H  +   ++VTG H+ E  ++  +    T+N     +      +N K +K
Sbjct: 303 FGSPQSATHLYQCAKSLVTGNHVQECRKIF-VDEGSTSNRESDCSGNEDDSSNAKYAK 359


>U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical
           protein M60.6 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 314 TCFGRPSTAFHSVRRIGNVVTGGHI*EGSRVEPLYRSGTNNTTRSMTSGSSK 469
           TC     T F  ++ +G+    G +     ++PL +S  NNT  S+ +GS++
Sbjct: 201 TCVVASRTLFSPLKELGDQSATGDL--TVEMQPLNQSEENNTYSSLPNGSTQ 250


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 469 LAGARSHRTCSVIGTTSIKRLDTRTLSYVAAGNYIPDPADRMESSGRSPKTRHLG 305
           +AG  S   C VIG   +      +     AG Y+ D    + ++  SP   HLG
Sbjct: 484 IAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYVDDAVTYVWTNFISPNANHLG 538


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 469 LAGARSHRTCSVIGTTSIKRLDTRTLSYVAAGNYIPDPADRMESSGRSPKTRHLG 305
           +AG  S   C VIG   +      +     AG Y+ D    + ++  SP   HLG
Sbjct: 484 IAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYVDDAVTYVWTNFISPNANHLG 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,335
Number of Sequences: 27780
Number of extensions: 240899
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)