Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0104
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 82  GHLNNATSVKFQPNPPV 132
           G++ N T  K++PNP +
Sbjct: 141 GNVLNLTMPKYEPNPSI 157


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 82  GHLNNATSVKFQPNPPV 132
           G++ N T  K++PNP +
Sbjct: 141 GNVLNLTMPKYEPNPSI 157


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 231 YYLCKNRVVKLKQVILYRMRREFWSEGRQTPE 136
           YY+C    +    VI+  +  E W+  R+  E
Sbjct: 135 YYVCLAMTITGPLVIIGNIAMELWNMPRENIE 166


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 357 PKHPVSHYPLQLYNAIHTRIVTMTIVSQINSDT 455
           P++PV   P  + N +    +T   V   +SDT
Sbjct: 746 PRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDT 778


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 357 PKHPVSHYPLQLYNAIHTRIVTMTIVSQINSDT 455
           P++PV   P  + N +    +T   V   +SDT
Sbjct: 638 PRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDT 670


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,548
Number of Sequences: 336
Number of extensions: 2335
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)