Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0104
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    28   4.1  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 572 PPPGDRTVAKSALQRAGAVTSRGYIQRVF--FVSLTDNKLHSVGI 444
           PP    T++      A   TS GYI  +F  FVS  +N L+ + +
Sbjct: 45  PPGSSATISAPGASAATVPTSYGYISNMFKNFVSKVENPLNYLSV 89


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 563  GDRTVAKSALQRAGAVTSRGYIQRVFFVSLTDNKLHSVGIY 441
            G RTV  S+LQ    +T     Q+ ++    DN++HSVG+Y
Sbjct: 1481 GRRTVF-SSLQYPFGLT-HDEEQKFYWTDWKDNRIHSVGVY 1519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,670
Number of Sequences: 27780
Number of extensions: 231911
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)