Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0104
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 534 TTRGRGDVTRLHTACVFCFSNGQ 466
           T R + +   L T CVFC +NG+
Sbjct: 26  TPRRKKNKKPLPTECVFCRNNGE 48


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 520 APARCKALFATVRSPGGG 573
           +P    AL + VRSP GG
Sbjct: 390 SPVSMSALVSAVRSPAGG 407


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 HTLYVAVVTSPSPRVVPKHPV 371
           ++LY AV+T P  + +   P+
Sbjct: 142 YSLYTAVITRPDTKFIQLPPL 162


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 HTLYVAVVTSPSPRVVPKHPV 371
           ++LY AV+T P  + +   P+
Sbjct: 142 YSLYTAVITRPDTKFIQLPPL 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,375
Number of Sequences: 438
Number of extensions: 3163
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)