Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0104
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    28   3.8  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    28   3.8  
At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identic...    28   5.1  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   6.7  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    27   6.7  

>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1556

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 194  RLYYTGCAGNFGLKVDRRLN 135
            RLY TGC  N+ L V +RL+
Sbjct: 1354 RLYMTGCNSNYSLAVKKRLS 1373


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1544

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 194  RLYYTGCAGNFGLKVDRRLN 135
            RLY TGC  N+ L V +RL+
Sbjct: 1340 RLYMTGCNSNYSLAVKKRLS 1359


>At4g35000.1 68417.m04963 L-ascorbate peroxidase 3 (APX3) identical
           to ascorbate peroxidase 3 [Arabidopsis thaliana]
           GI:2444019, L-ascorbate peroxidase [Arabidopsis
           thaliana] gi|1523791|emb|CAA66926; similar to ascorbate
           peroxidase [Gossypium hirsutum] gi|1019946|gb|AAB52954
          Length = 287

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 42  GRASPARHHYSGPWTSE 92
           GRA P R  + GPWT E
Sbjct: 163 GRAHPERSGFDGPWTQE 179


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 HL*SSGVCLPSDQNSLRILYNIT 193
           HL    VCLPS +N  R+LY ++
Sbjct: 437 HLHQLHVCLPSSKNKTRLLYRMS 459


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 HL*SSGVCLPSDQNSLRILYNIT 193
           HL    VCLPS +N  R+LY ++
Sbjct: 437 HLHQLHVCLPSSKNKTRLLYRMS 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,169
Number of Sequences: 28952
Number of extensions: 204689
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)