Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0103
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 40 3e-04
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 29 0.43
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 1.1
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 1.8
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 4.0
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 26 5.3
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 26 5.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.1
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.3
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 9.3
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 9.3
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 39.9 bits (89), Expect = 3e-04
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +3
Query: 189 FVLKPQREGGGNNVYGSEV 245
FVLKPQREGGGNN YG ++
Sbjct: 384 FVLKPQREGGGNNTYGKDI 402
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 29.5 bits (63), Expect = 0.43
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -3
Query: 311 ISSPSVCTRLAPGCVACESRVPHFRTVHIIPATFPLRLQYESIQKQKKSLKVYICINNT* 132
+ +P T + G ES+ HI+ + P+ ++ +QKKS ++ IN
Sbjct: 1 MKTPKFITYVTRGFKGLESKSVENNKDHIVENSSPIASKFHEFDEQKKSFEI---INYAG 57
Query: 131 SKNFVPLFTETE 96
+ FV TE E
Sbjct: 58 HEKFVDDITERE 69
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 23.4 bits (48), Expect(2) = 1.1
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -1
Query: 334 IDPYQRRQYPLHQYVRGSLPAVSHASHASLTSEPYTLFPPPSL 206
I P P H V S A +H +H+SLT PSL
Sbjct: 182 IHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQSGYSSMPSL 224
Score = 23.0 bits (47), Expect(2) = 1.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 133 EAKTLYPFLRRRRNMKFHTLMENIEKESAGEKGG 32
+ + LYPF+ + RN+ + M +SA G
Sbjct: 257 QPQALYPFIYQSRNVPMGSTMFASSNQSAAHPDG 290
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -2
Query: 390 CTGLLIF*AKMTSLIRVK*SILTR--GGNILSISM--YAARSRLCRMRVTRPSLPNRTH 226
CT +L++ T+ I + + LTR G L+ ++ + R C+++ PSL N TH
Sbjct: 347 CTTILVYPFSGTNSIAITNTDLTRLNEGEFLNDTIVDFYLRYLYCKLQTQNPSLANDTH 405
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 414 LVHRYRYECTGLLIF*AKMTSLIRVK*SILTRGGNILSISMYAARSRLCRMR 259
LV +Y +G+L++ +RV+ + G N +IS Y++ S + R R
Sbjct: 500 LVQLKKYSQSGILVYIPSYFDFVRVRNYMDEEGINYSAISEYSSVSDMTRAR 551
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 328 PYQRRQYPLHQYVRGSLPAVSHASHASLTSEPYTLFPP 215
P RR Y GS+PA + AS AS +P PP
Sbjct: 191 PPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPP 228
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 463 VRYF-IRKIGTRPRDSNTGASLQ 398
+RY I+K+GT PR +TG LQ
Sbjct: 30 IRYLHIKKLGTIPRCGDTGVPLQ 52
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 463 VRYF-IRKIGTRPRDSNTGASLQ 398
+RY I+K+GT PR +TG LQ
Sbjct: 30 IRYLHIKKLGTIPRCGDTGVPLQ 52
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +2
Query: 56 FLYILHKCVKFHIP----PSP*KGVQSFCFTYY*YIYRLLNFFF 175
F + C +FHI P V FCF +Y ++ +F F
Sbjct: 81 FFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124
>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 142 IIREAKTLYPFL--RRRRNMKFHTLMENIEKESAGEKG 35
+I+E KT P RRR N++ E + E+A E+G
Sbjct: 85 VIKEQKTSRPIRASRRRANLRNRRAKELLAAENASEEG 122
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 9.3
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 406 SLQIRMHWTSYLLGQDDFTNSS*MIDPYQRRQYPLHQYVRG--SLPAVSHASHASLTSEP 233
S +R Y L TNS+ +I P Q P+ V+ +L S SHA+ TS
Sbjct: 358 STLLRADTKQYGLALPKITNSN-LISPNQTFN-PVKSSVKALPTLEPPSSPSHATATSSL 415
Query: 232 YTLF 221
+TLF
Sbjct: 416 HTLF 419
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 216 HLPFEASIRIYTKTKKKFKSLYMY 145
H+P ++ I + KTK +FK +Y
Sbjct: 102 HVPSDSKIATFIKTKYEFKKWVLY 125
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 285 ARSRLCRMRVTRPSLPNRTHYSRHLPFEAS 196
A SRL RV RP+ P+ T Y L + S
Sbjct: 47 ANSRLASQRVHRPNSPHLTIYEPQLTWYLS 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,585
Number of Sequences: 5004
Number of extensions: 59970
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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