Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0103
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756...    44   8e-05
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926...    44   1e-04
04_03_0145 - 11799689-11800108                                         30   1.4  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    29   3.2  
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397     28   5.5  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   5.5  

>12_02_0593 +
           20874459-20874575,20875258-20875427,20875597-20875672,
           20875764-20875894,20876570-20876692,20876780-20876893,
           20877163-20877239,20877405-20877472,20877740-20877861,
           20878041-20878180,20878411-20878603,20878692-20878827
          Length = 488

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 189 FVLKPQREGGGNNVYGSEVRDA*LACDTAGSE 284
           FVLKPQREGGGNN+YG +VR+  +     G +
Sbjct: 370 FVLKPQREGGGNNIYGIDVRETLIRLQKEGGD 401


>12_01_0933 -
           9263023-9263146,9263224-9263416,9263495-9263634,
           9263760-9263881,9263970-9264039,9264463-9264498,
           9264567-9264692,9265294-9265424,9265549-9265645,
           9265858-9266027,9267817-9267874,9268758-9269074
          Length = 527

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 189 FVLKPQREGGGNNVYGSEVRDA*LACDTAGS 281
           FVLKPQREGGGNN+YG  +R+  ++    GS
Sbjct: 413 FVLKPQREGGGNNIYGDNLRETLISLKKDGS 443



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 272 SRERAAYILMERILPP 319
           S E AAYILM+RI PP
Sbjct: 443 SNELAAYILMQRIFPP 458


>04_03_0145 - 11799689-11800108
          Length = 139

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 326 LPEAAISSPSVCTRLAPGC 270
           +P  A +SPS CT +APGC
Sbjct: 1   MPRGAAASPSWCTPMAPGC 19


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 363 KMTSLIRVK*SILTRGGNILSISMYAARSRLCRMRV 256
           K   L  V  S L +GG +LS+S+Y +   L RM++
Sbjct: 253 KAVDLYMVMTSCLPKGGRVLSVSVYPSEFGLERMKI 288


>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
          Length = 469

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 291 YAARSRLCRMRVTRPSLPNRTHYSRHL 211
           YA+R R   +RV  P LP+  H++R L
Sbjct: 319 YASRMRRLGLRVAYPGLPDHPHHARLL 345


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 623  GRNSRQGGGTYPRGIT-RGPTTSNYTKYNFAGLIFITR 513
            G +S +GGG   RG + RG +T+  T+Y+  GL+ + R
Sbjct: 4892 GGSSNEGGGESYRGRSGRGGSTTWVTEYDLYGLLGVER 4929


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,591
Number of Sequences: 37544
Number of extensions: 389455
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)