Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0103
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 225 YSRHLPFEASIRIYTKTKKKFKS 157
           Y   +P+  S+RI++K KKK+KS
Sbjct: 322 YLHEMPYYCSLRIFSKEKKKWKS 344


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 342 LELVKSSWPKR*EVQCIRICSDAPVFESRGRVPIFLMKY 458
           LE VK+S   R  +Q +R+   AP   + G+VPIF  ++
Sbjct: 386 LEEVKTS-RSRWTIQALRLLVPAPEVNNMGKVPIFRKEF 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,496,575
Number of Sequences: 59808
Number of extensions: 456056
Number of successful extensions: 901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)