Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0103
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68119-2|CAA92192.1|  457|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U16708-1|AAC46497.1|  457|Caenorhabditis elegans odr-7 protein.        27   8.6  

>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 120 KVFASRIINTYIDF*TFFLFLYRFVLKPQREGG 218
           K+    IIN ++    FFLF++ FV++P   GG
Sbjct: 91  KMMLIGIINVFLIL-AFFLFMFFFVVQPNVHGG 122


>Z68119-2|CAA92192.1|  457|Caenorhabditis elegans Hypothetical
           protein T18D3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 272 CVACESRVPHFRTVHIIPATFP-LRLQYESIQKQKKSLK 159
           C+AC+  +PHF+    IP  FP  R+  E I+     L+
Sbjct: 22  CMACQMLIPHFQ---CIPGIFPNFRISTELIKTMTDKLE 57


>U16708-1|AAC46497.1|  457|Caenorhabditis elegans odr-7 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 272 CVACESRVPHFRTVHIIPATFP-LRLQYESIQKQKKSLK 159
           C+AC+  +PHF+    IP  FP  R+  E I+     L+
Sbjct: 22  CMACQMLIPHFQ---CIPGIFPNFRISTELIKTMTDKLE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,726
Number of Sequences: 27780
Number of extensions: 336252
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)