Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0101
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   5.4  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   5.4  

>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 356 VIHSLTDIETILRTRDIAQQ*QYFTNP 436
           V H + D+  +   RDI Q  +YF NP
Sbjct: 279 VTHMMPDLPNVGMERDIFQFQEYFENP 305


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 205 YYSRKFITFSLFYILLFNSIRS 270
           YYS  ++  S+FY+L F S+R+
Sbjct: 272 YYSIIYLLNSMFYLLTFYSLRA 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,952
Number of Sequences: 5004
Number of extensions: 31518
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)