Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0101
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    29   1.8  
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511...    27   7.2  

>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 394  NTRHRSTVTILYKPIIHIINVNCTLVTRYWRRGARLN 504
            ++RH ST     KP I  + V+   V  YWRRG RL+
Sbjct: 894  SSRHGSTRKPGRKPFIVELKVDSRDVGVYWRRGGRLS 930


>01_06_0364 -
           28749825-28750053,28750442-28750621,28751018-28751147,
           28751442-28751756,28752033-28752075,28752108-28752500
          Length = 429

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 375 TLKRYLEHATSLNSDNTLQTHNTYH 449
           TL+RY E   SL SD     HN YH
Sbjct: 307 TLERYKEREKSLISDFKKLCHNNYH 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,240,153
Number of Sequences: 37544
Number of extensions: 156567
Number of successful extensions: 184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)