Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0101
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)            29   3.2  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
          Length = 1405

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 386  SFQCPLMNELR*R*NTNVCTVFNYTSHSNKQ 294
            S QCPL N  R R  +  CT   + +H+++Q
Sbjct: 1263 SLQCPLRNRRRQRHRSRSCTPHVHAAHADRQ 1293


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 159 RSYCERNKTHFKINNRKTTVDC 94
           + YCE+ KT+ + N RKT   C
Sbjct: 759 QGYCEKRKTYMQFNCRKTCGMC 780


>SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  CLILITIHSRFPIIYFKMGFISF 147
           C I+ TI   FP +YF +G+I +
Sbjct: 239 CAIVWTISIVFPFLYFHIGYIQY 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,634
Number of Sequences: 59808
Number of extensions: 210914
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)