Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0100
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 5e-04
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 37 0.003
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.018
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.024
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.024
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.042
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.056
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.074
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.13
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.13
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 30 0.22
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.30
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.30
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.30
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.52
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 0.91
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 28 1.2
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 28 1.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 1.2
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 28 1.2
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 28 1.2
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 26 3.7
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 4.8
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.4
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 6.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.5
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 270 INKIFSKFGKIVN---EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
+ ++FSKFG+I + YP+TE ++ GY F+ +S+P A +A+ N K+ F+
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTE--ISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 273 NKIFSKFGKIVNE--YYPTTE-NG--LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 437
+K+ +K GK+ Y P E NG ++ G +F ++ N A V+ + ++ K HTF
Sbjct: 63 SKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVFADFENVDGADLCVQELDGKQILKNHTF 122
Query: 438 LVNLFTDFQKYSDIPKEW 491
+V +K P E+
Sbjct: 123 VVRKLNQLEKAFSTPDEF 140
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENG-LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
I +IF +G I + + P + L GY ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.018
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 437
++ I ++++ GK V + G+ GY F+E+++P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 438 LVN 446
+N
Sbjct: 166 KLN 168
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
FSKFGK+ PT G G+ F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.024
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+S++ F FG+I++ E + Y F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.7 bits (71), Expect = 0.042
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 282 FSKFGKIVNEYYP----TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
FS +G +++ P T +GL TG +F+ YS+ ++A A++ CK +
Sbjct: 448 FSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFN 498
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.056
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 IFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
IFS+FGKI++ + E G + Y F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.074
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNE-YYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
+ V+ FS G++V ENG + GY F+ Y + + A A++A NN
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 416
+ + + G ++N NGL+ G +EYS + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.1 bits (67), Expect = 0.13
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
++ FS FGKI++ E G GY F+ + + ++A A++ N L+ + ++
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = +3
Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTD 458
+F +FG+I + +N G+ F+ Y+N + A +AV N+ + + ++
Sbjct: 280 LFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
Query: 459 FQKYSDIPKEWE 494
++ ++ K +E
Sbjct: 340 HEREEELRKRYE 351
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 327 ENGLTTGYIFLEYSNPQNAAEAVKATNN 410
E+G GY F EY +P AA AV+ NN
Sbjct: 41 ESGQPKGYGFCEYHDPATAASAVRNLNN 68
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 378 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 476
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 378 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 476
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 378 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 476
N + K N K DK FL NLFT+F K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 378 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 476
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 428
+ +F+ FG + N + G GY +EY+ + A +AV N LD++
Sbjct: 26 VEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 0.91
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -2
Query: 153 FFFRNLYEILWVVKIRFFFKVLFLIV 76
FFFRNL++I++V+ + + +F+I+
Sbjct: 1022 FFFRNLFQIVFVLAVICYSSPMFMIL 1047
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYP 320
K++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYP 320
K++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYP 320
K++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYP 320
K++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYP 320
K++ +N +F++F K N YYP
Sbjct: 74 KIKEFLNDLFTEFSKFHNSYYP 95
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 172 EQKPKESDGYENVVVVDGCPQVGPERLENYRAL 270
+QKP E+D ++VD +V P+R YR L
Sbjct: 303 KQKPTEADIKRWTLLVDKMIKVDPQRRGRYRTL 335
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYP 320
K++ +N F++F K N YYP
Sbjct: 74 KIKEFLNDPFTEFSKFHNSYYP 95
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 282 FSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQ 377
F + G++ + PT + +G GY F+E+ NP+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -1
Query: 301 ILPNLLNILFITLCSFQDARGRPADTRLRLQRFHNRQIP*ASVLRYPPIILLQESLRNPL 122
+LP ++ ILF L +F + +TR Q+ + +P + P + Q+ L + L
Sbjct: 268 LLPLIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPRTTAKHNIPYYMSQKDL-DKL 326
Query: 121 GRQNQVLLQSSVPHCHFEEL 62
++ L V H + + +
Sbjct: 327 SSRDIRRLNEKVEHTYTQNV 346
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 196 GYENVVVVDGCPQVGPERLENYRA 267
G+ NV V CP ++L+NY+A
Sbjct: 816 GHRNVFVKSTCPIFFQKQLDNYKA 839
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,833
Number of Sequences: 5004
Number of extensions: 50816
Number of successful extensions: 174
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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