Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0100
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 8e-23
SB_29106| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.033
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 35 0.058
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.54
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.6
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 2.9
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.9
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 28 5.0
SB_30587| Best HMM Match : IncA (HMM E-Value=0.42) 28 6.6
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 28 6.6
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 28 6.6
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 103 bits (248), Expect = 8e-23
Identities = 52/108 (48%), Positives = 64/108 (59%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHT 434
KL++VI K+FSKFG+IV E+YP E LT GYIFLE+SN +A AVK N KLDK H
Sbjct: 89 KLKNVIRKVFSKFGQIVTEHYPM-EKDLTRGYIFLEFSNASDAVRAVKTANGYKLDKHHI 147
Query: 435 FLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQICNGI*WDPDAYDQFLV 578
F VN F DF K + +EW+ P + DPD DQ+ V
Sbjct: 148 FAVNHFEDFNKLLSLKEEWQEPTKQPYEQQENLRSWLLDPDCNDQYSV 195
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDGCPQVGPERLENYR 264
LL DIL QKP E++G + ++VVD P+VGPER+E +
Sbjct: 55 LLGDILRQKPSETEGTDCIIVVDNVPKVGPERVEKLK 91
>SB_29106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 154 LLADILEQKPKESDGYENVVVVDGCPQVGPERLENYR 264
LL DIL QKP E++G + ++VVD P+VGPER+E +
Sbjct: 55 LLGDILRQKPSETEGTDCIIVVDNVPKVGPERVEKLK 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 255 KLQSVINKIFSKFGKIVNEYYPTTENGLT 341
KL++VI K+FSKFG+IV E+YP E LT
Sbjct: 89 KLKNVIRKVFSKFGQIVTEHYP-MEKDLT 116
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 428
Q I KIF G + + + G + GY F+ Y NP +A +AV+ N +L +
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNK 96
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
+S I ++FSK G + T G GY ++EY +A+ AV + ++ K T
Sbjct: 184 ESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEV-KGRTIS 242
Query: 441 VNLFTDFQKYSDIPKEWEPPAPHHSR 518
V L + +E PP P SR
Sbjct: 243 VALSNPPTRRGPPRQEHPPPPPPGSR 268
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 258 LQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
L+ I +F FGK+V+ G GY F+EY N Q+A +A+ + N
Sbjct: 211 LEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATN 407
+ K+FS+FGK++ P + NG G+ F+E+ + Q A V+ N
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 336 LTTGYIFLEYSNPQNAAEAVKATNNCKL 419
L T Y F+EY +P++A EA++ NN KL
Sbjct: 37 LKTAYGFIEYEDPRDAEEAMRRENNRKL 64
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
+ +I ++ GKIV+ T G + G+ F+ + P+ A EAV N
Sbjct: 125 MKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 419
I+++FS +G+I N + G GY +EY + A A++A N ++
Sbjct: 309 IHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEM 359
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419
+++I ++F + G +VN + P L GY F+E+ ++A A+K N K+
Sbjct: 26 EALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKV 79
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
+ +IFS+ G +++ E G GY F EY + + A A++ N +L+
Sbjct: 41 LKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELN 92
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 309 EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
E ++ G G+ F+E++N + A A++ATNN
Sbjct: 613 ERLDSSGKGRPLGFAFVEFTNHKEALAALRATNN 646
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 454 RTFKSIQIFQKNGSHRHLTIQGAVRSAMVFNGILMHMTSSLLAFGTGW 597
RT++ IQ+ +GS RH+ I + GI +H + L+ F T W
Sbjct: 1100 RTYRFIQVATLDGSRRHVLISSGLDKP---RGIAVHPQAGLM-FWTDW 1143
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 330 NGLTTGYIFLEYSNPQNAAEAVKATNN 410
+GLT G+ F +SN A AVK +N
Sbjct: 189 SGLTKGFAFCTFSNKDEAQNAVKKLDN 215
>SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 380 ILWVTVFQENVPSRESILSRGVVFVDYFTEFTKYFVY 270
ILW T F+ ++P I V+FV +F VY
Sbjct: 295 ILWYTNFEHHLPLDVEIAGLAVIFVFFFAGVAMMVVY 331
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 306 NEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
NE+Y E + G+ F+ ++NP++A AVK+ N
Sbjct: 88 NEFYQQQEPR-SRGFGFVTFANPEDAQTAVKSLN 120
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 398 FHGFGGIL-WVTVFQENVPSRESILSRGVVFVDYFTEFTKYFVYNAL*FSRRSGPTCGH 225
F GFG L WV +++E + + G+V + Y+ + L R+S TC H
Sbjct: 288 FFGFGFTLGWVFLWEEKLINASLGFMGGIVLSMFIALAIAYYRLDELLLRRKSFSTCDH 346
>SB_30587| Best HMM Match : IncA (HMM E-Value=0.42)
Length = 272
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 343 VVSPFSVVG*YSLTILPNLLNILFITLCSFQD 248
VV+P +V +LP+ LN+LF+ LC +D
Sbjct: 106 VVAPVTVA--VVAAVLPSKLNLLFVLLCRVED 135
>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 KFGKIVNEYYPTTENGLTT-GYIFLEYSNPQNAAEAVKAT 404
K+ + +++ P +N T GY+F NP+ E+V AT
Sbjct: 27 KYLHVPSDFRPPKQNLSTRKGYVFTHIGNPETIEESVDAT 66
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
++ IF K+G I + G + F+E+ +P++A +AVK + + D
Sbjct: 277 LHDIFYKYGHIADVDLKN-RRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFD 326
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 241 GRPADTRLRL-QRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEE 65
G A T LRL +R + ++P R+ P+ILL N +GR+ Q S + H +
Sbjct: 57 GSGAQTWLRLDKRVLDHELP-----RHDPLILLFAVRTNSIGRKQQPSASSMMVHVWYAS 111
Query: 64 LDSLFHRLFS 35
+L ++S
Sbjct: 112 TSTLAKAMWS 121
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 264 SVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
S ++K+F ++GK+V E + G F+ + + Q+A AV A N
Sbjct: 24 SDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVN 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,175,729
Number of Sequences: 59808
Number of extensions: 363439
Number of successful extensions: 852
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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