Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0100
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.0  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 435 FLVNLFTDFQKYSDIPKEWEPPAPHHSRC 521
           F V L T    Y     EW+PPA + S C
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSC 153


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 441 VNLFTDFQKYSDIPKEWEPPAPHHSRCS 524
           V L T    Y      W+PPA + S CS
Sbjct: 127 VTLMTKATVYYSGLVVWQPPAVYKSSCS 154


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 126 LWVVKI-RFFFKVLFLIVTLRSWIRF 52
           +++ K+ RFFF   FLI+ +  W  F
Sbjct: 357 IYIDKVSRFFFPFSFLILNVVYWSTF 382


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 486 EWEPPAPHHSRC 521
           EW+PPA + S C
Sbjct: 138 EWKPPAIYKSSC 149


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 330 NGLTTGYIFLEYSNPQNAAEAVKA 401
           N L   Y F +YSN   A E++ A
Sbjct: 23  NVLDFDYYFYDYSNRTQALESIIA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,139
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)