BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0100 (601 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 74 8e-14 At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 73 2e-13 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 2e-04 At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 39 0.002 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.015 At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.020 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.083 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.14 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 33 0.14 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.44 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.58 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.58 At1g74800.1 68414.m08666 galactosyltransferase family protein co... 30 1.0 At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.3 At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.3 At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 30 1.3 At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 1.8 At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 1.8 At1g62870.1 68414.m07099 expressed protein 29 1.8 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 1.8 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 2.4 At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 29 3.1 At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 3.1 At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 28 4.1 At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 28 4.1 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 4.1 At1g12380.1 68414.m01431 expressed protein 28 4.1 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 5.4 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 5.4 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 28 5.4 At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 27 7.2 At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei... 27 7.2 At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei... 27 7.2 At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 27 9.5 At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 9.5 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 9.5 At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 9.5 >At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3 subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana} Length = 712 Score = 73.7 bits (173), Expect = 8e-14 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Frame = +3 Query: 255 KLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 425 KL+ V+ KI+++ G I + P + +T GY F+E++ PQ A A + ++ KLDK Sbjct: 73 KLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 132 Query: 426 QHTFLVNLFTDFQKYSDIPKEWEPP 500 H F VN+F DF + ++ +EWEPP Sbjct: 133 SHIFAVNMFDDFDRLMNVKEEWEPP 157 >At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3 subunit 9, putative / eIF-3 eta, putative / eIF3b, putative nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana} Length = 714 Score = 72.5 bits (170), Expect = 2e-13 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Frame = +3 Query: 255 KLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 425 KL+ V+ KI+++ G I P + +T GY F+E++ PQ A A + ++ KLDK Sbjct: 74 KLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 133 Query: 426 QHTFLVNLFTDFQKYSDIPKEWEPP 500 H F VN+F DF + ++ +EWEPP Sbjct: 134 SHIFAVNMFDDFDRLMNVKEEWEPP 158 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 42.3 bits (95), Expect = 2e-04 Identities = 18/52 (34%), Positives = 30/52 (57%) Frame = +3 Query: 261 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 416 + ++ + F++FGKIV+ EN L GY F+ + NP++A A + N K Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTK 265 Score = 35.5 bits (78), Expect = 0.027 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 264 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410 +V+ +F KFG IV+ T E+G + GY F+++ A A++ N+ Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174 >At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 39.1 bits (87), Expect = 0.002 Identities = 19/79 (24%), Positives = 40/79 (50%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449 I +F K+G +++ + G +F+E ++P+ AA A+K+ +C+ + + V+ Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRR-LKVDY 168 Query: 450 FTDFQKYSDIPKEWEPPAP 506 +K + P+E P P Sbjct: 169 AKTKKKKTYAPRETPSPVP 187 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 36.3 bits (80), Expect = 0.015 Identities = 18/75 (24%), Positives = 37/75 (49%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449 +NK+F +FG + G + G+ F+ + N +AA AV A N D + F+ Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299 Query: 450 FTDFQKYSDIPKEWE 494 ++ +++ +++E Sbjct: 300 QKKSERETELKQKFE 314 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 35.9 bits (79), Expect = 0.020 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 +N++FS++G I + Y + + GY F+++S + A A+KA N Sbjct: 223 VNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 33.9 bits (74), Expect = 0.083 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440 + ++FS FG+I + P G GY F+E+ Q A A KA + +H L Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 741 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 33.1 bits (72), Expect = 0.14 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +3 Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419 + ++ ++F + G +VN Y P L Y F+EY + ++A A+K N KL Sbjct: 38 EELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKL 91 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 33.1 bits (72), Expect = 0.14 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449 + ++FS+FG I + NG++ G F+E+S + A++A+ N + + ++ Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298 Query: 450 FTDFQKYSDIPKEWE--PPAPH 509 Q + ++ PP+PH Sbjct: 299 QCKEQHKLHLQTQFNNPPPSPH 320 Score = 27.9 bits (59), Expect = 5.4 Identities = 13/51 (25%), Positives = 26/51 (50%) Frame = +3 Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 431 +FS FGK+++ +G++ GY F+++ + + A N + QH Sbjct: 50 MFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQH 100 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 31.5 bits (68), Expect = 0.44 Identities = 13/57 (22%), Positives = 32/57 (56%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440 ++ +FS++G + + G + G+ F+ + NP+NA +A+++ +L + F+ Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274 Score = 31.1 bits (67), Expect = 0.58 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422 + +IF +G+IV+ ENG + G+ F+ +SN + + +A + N +D Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 31.1 bits (67), Expect = 0.58 Identities = 12/50 (24%), Positives = 25/50 (50%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419 + K+F FG + P E GL G+ F++++ ++A A+ ++ Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEI 350 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 31.1 bits (67), Expect = 0.58 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +3 Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 431 I F FG+I N +G GY +EY + A A+ A N +L Q+ Sbjct: 111 ITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165 >At1g74800.1 68414.m08666 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase Length = 672 Score = 30.3 bits (65), Expect = 1.0 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -1 Query: 235 PADTRLRLQRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEELDS 56 P D RL++ +N Q P ++ PP+ + + NP L+Q+ V H L S Sbjct: 58 PLDALSRLEKLNNEQEPQVEIIPNPPLEPVSYPVSNPTIVTRTDLVQNKVREHHRGVLSS 117 Query: 55 L 53 L Sbjct: 118 L 118 >At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 29.9 bits (64), Expect = 1.3 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 279 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422 +F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83 >At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 29.9 bits (64), Expect = 1.3 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 279 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422 +F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83 >At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 (ADO3) E3 ubiquitin ligase SCF complex F-box subunit; identical to FKF1 GI:6960305 and Adagio 3 GI:13487072 from [Arabidopsis thaliana]; contains Pfam profiles PF01344: Kelch motif, PF00785: PAC motif and PF00646: F-box domain; contains TIGRfam profile TIGR00229: PAS domain S-boxidentical to cDNA Adagio 3 (ADO3) GI:13487071 Length = 619 Score = 29.9 bits (64), Expect = 1.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503 TFL++L TD + +IP W PP+ Sbjct: 438 TFLLDLTTDKPTWKEIPTSWAPPS 461 >At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 126 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +3 Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 + K+FS+FG++ N + + GY ++ +++ ++A AV+A N Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120 >At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 172 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +3 Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 + K+FS+FG++ N + + GY ++ +++ ++A AV+A N Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139 >At1g62870.1 68414.m07099 expressed protein Length = 796 Score = 29.5 bits (63), Expect = 1.8 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +3 Query: 396 KATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQICN 536 KA N L+ QH ++VNL FQ ++ + +++ P SQ C+ Sbjct: 366 KALRN--LESQHQWMVNLSCQFQGFNSLIRDFVKELPLFKSVSQSCS 410 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +3 Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 +F +V+ +N + GY ++ +SNP +A A++A N Sbjct: 68 LFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110 Score = 28.7 bits (61), Expect = 3.1 Identities = 13/53 (24%), Positives = 26/53 (49%) Frame = +3 Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440 FS FG I++ G + GY F+++ ++A A+ N ++ + F+ Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 29.1 bits (62), Expect = 2.4 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +3 Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAV 395 +FS FGK++ G + G+ F+E+ + +A A+ Sbjct: 36 MFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAM 74 >At5g37720.1 68418.m04541 RNA and export factor-binding protein, putative transcriptional coactivator ALY, Mus musculus, EMBL:MMU89876 Length = 288 Score = 28.7 bits (61), Expect = 3.1 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422 I ++FS+ G++ +NG +G + Y +A +A+K NN LD Sbjct: 109 IRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLD 159 >At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 427 Score = 28.7 bits (61), Expect = 3.1 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = +3 Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 437 +S I + F +G I + T + GY F+EY + ++ A K + K+D + Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGR--- 207 Query: 438 LVNLFTDFQKYSDIPKEWEP 497 + D ++ +P W P Sbjct: 208 --RVLVDVERGRTVP-NWRP 224 >At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein similar to serine-type carboxypeptidase (SP:P55748) [Hordeum vulgare] Length = 479 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 442 TKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVS 335 T+ CCL N + +AF A+A C S+K VS Sbjct: 4 TRGSCCLVNALIAIAFLATAHLCEAGLSQKEQDKVS 39 >At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing protein similar to ssRNA-binding protein [Dictyostelium discoideum] GI:1546894; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 245 Score = 28.3 bits (60), Expect = 4.1 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 267 VINKIFSKFGKI-VNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 V++K F++F + + G T GY F+ + NP + A A+K N Sbjct: 152 VLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 199 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/49 (26%), Positives = 29/49 (59%) Frame = +3 Query: 264 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410 S + ++FSKFG++ + +GY F+ + + ++A +A++ T+N Sbjct: 16 SDLERLFSKFGRVKRV-------DMKSGYAFVYFEDERDAEDAIRRTDN 57 >At1g12380.1 68414.m01431 expressed protein Length = 793 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +3 Query: 396 KATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQIC 533 KA N L+ QH ++VNL FQ + + K++ P SQ C Sbjct: 379 KALRN--LESQHQWMVNLSCQFQGLNSLIKDFVKELPLFKSVSQNC 422 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 27.9 bits (59), Expect = 5.4 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 + +IF +FG + + Y E + G F++YS+ + A A+ N Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 27.9 bits (59), Expect = 5.4 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 + +IF +FG + + Y E + G F++YS+ + A A+ N Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = +3 Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440 FS FG I++ G + GY F+++ + A A+ N L+ + F+ Sbjct: 152 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204 >At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / spliceosomal protein U1A / U1snRNP-specific protein identical to GB:Z49991 U1snRNP-specific protein [Arabidopsis thaliana] Length = 250 Score = 27.5 bits (58), Expect = 7.2 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = +3 Query: 255 KLQSVINKIFSKFGKIVNEY-YPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410 +L+ +N +FS+FGKI+ + T ++ G ++ + N ++A+ A+ NN Sbjct: 33 ELKKSLNAVFSQFGKILEILAFKTFKH---KGQAWVVFDNTESASTAIAKMNN 82 >At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2 (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex F-box subunit; identical to Adagio 2 GI:13487070 from [Arabidopsis thaliana]; contains Pfam profiles PF01344: Kelch motif and PF00646: F-box domain; identical to cDNA LOV kelch protein 2 GI:18146957; identical to cDNA Adagio 2 (ADO2) GI:13487069 Length = 611 Score = 27.5 bits (58), Expect = 7.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503 TFL++L D + +IP W PP+ Sbjct: 427 TFLLDLSMDIPAWREIPVPWTPPS 450 >At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2 (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex F-box subunit; identical to Adagio 2 GI:13487070 from [Arabidopsis thaliana]; contains Pfam profiles PF01344: Kelch motif and PF00646: F-box domain; identical to cDNA LOV kelch protein 2 GI:18146957; identical to cDNA Adagio 2 (ADO2) GI:13487069 Length = 601 Score = 27.5 bits (58), Expect = 7.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503 TFL++L D + +IP W PP+ Sbjct: 417 TFLLDLSMDIPAWREIPVPWTPPS 440 >At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 130 Score = 27.1 bits (57), Expect = 9.5 Identities = 8/16 (50%), Positives = 14/16 (87%) Frame = +3 Query: 270 INKIFSKFGKIVNEYY 317 + K+FS+FG++ NE+Y Sbjct: 74 LKKVFSEFGQVTNEHY 89 >At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like SR protein (SRZ22) identical to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like SR protein [Arabidopsis thaliana] GI:3435094; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) and PF00098: Zinc knuckle; identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093 Length = 200 Score = 27.1 bits (57), Expect = 9.5 Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 3/32 (9%) Frame = +3 Query: 345 GYIFLEYSNPQNAAEAVKA---TNNCKLDKQH 431 GY FL++ +P++A +A++A N ++++ H Sbjct: 39 GYAFLDFEDPRDARDAIRALDGKNGWRVEQSH 70 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 27.1 bits (57), Expect = 9.5 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422 I IF K+G+IV+ Y F+E+ + ++A +A+K + LD Sbjct: 23 IEDIFYKYGRIVDIELKVPPR--PPCYCFVEFEHSRDAEDAIKGRDGYNLD 71 >At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam profiles PF01743: polyA polymerase family protein, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 881 Score = 27.1 bits (57), Expect = 9.5 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +3 Query: 255 KLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407 K+ +I+ F G++V+ T NGL F+E+++ A +A+ N Sbjct: 576 KMPDIID-FFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,807,395 Number of Sequences: 28952 Number of extensions: 259566 Number of successful extensions: 723 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 723 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1187288784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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