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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0100
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27640.1 68418.m03311 eukaryotic translation initiation facto...    74   8e-14
At5g25780.1 68418.m03060 eukaryotic translation initiation facto...    73   2e-13
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    42   2e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    39   0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    36   0.015
At2g47310.1 68415.m05906 flowering time control protein-related ...    36   0.020
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    34   0.083
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    33   0.14 
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    33   0.14 
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    31   0.44 
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    31   0.58 
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    31   0.58 
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    30   1.0  
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    30   1.3  
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    30   1.3  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    30   1.3  
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ...    29   1.8  
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    29   1.8  
At1g62870.1 68414.m07099 expressed protein                             29   1.8  
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       29   1.8  
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    29   2.4  
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    29   3.1  
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    29   3.1  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    28   4.1  
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    28   4.1  
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    28   4.1  
At1g12380.1 68414.m01431 expressed protein                             28   4.1  
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    28   5.4  
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    28   5.4  
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    28   5.4  
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s...    27   7.2  
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei...    27   7.2  
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei...    27   7.2  
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ...    27   9.5  
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    27   9.5  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    27   9.5  
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami...    27   9.5  

>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
           subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
           to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
           subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
           thaliana}
          Length = 712

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
 Frame = +3

Query: 255 KLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 425
           KL+ V+ KI+++ G I     + P   +  +T GY F+E++ PQ A  A + ++  KLDK
Sbjct: 73  KLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 132

Query: 426 QHTFLVNLFTDFQKYSDIPKEWEPP 500
            H F VN+F DF +  ++ +EWEPP
Sbjct: 133 SHIFAVNMFDDFDRLMNVKEEWEPP 157


>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
           subunit 9, putative / eIF-3 eta, putative / eIF3b,
           putative nearly identical to SP|Q9C5Z1 Eukaryotic
           translation initiation factor 3 subunit 9 (eIF-3 eta)
           (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
          Length = 714

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
 Frame = +3

Query: 255 KLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 425
           KL+ V+ KI+++ G I       P   +  +T GY F+E++ PQ A  A + ++  KLDK
Sbjct: 74  KLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 133

Query: 426 QHTFLVNLFTDFQKYSDIPKEWEPP 500
            H F VN+F DF +  ++ +EWEPP
Sbjct: 134 SHIFAVNMFDDFDRLMNVKEEWEPP 158


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 261 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 416
           + ++ + F++FGKIV+      EN L  GY F+ + NP++A  A +  N  K
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTK 265



 Score = 35.5 bits (78), Expect = 0.027
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 264 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
           +V+  +F KFG IV+    T E+G + GY F+++     A  A++  N+
Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449
           I  +F K+G +++      +     G +F+E ++P+ AA A+K+  +C+ + +    V+ 
Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRR-LKVDY 168

Query: 450 FTDFQKYSDIPKEWEPPAP 506
               +K +  P+E   P P
Sbjct: 169 AKTKKKKTYAPRETPSPVP 187


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449
           +NK+F +FG   +        G + G+ F+ + N  +AA AV A N    D +  F+   
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299

Query: 450 FTDFQKYSDIPKEWE 494
               ++ +++ +++E
Sbjct: 300 QKKSERETELKQKFE 314


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           +N++FS++G I + Y    +  +  GY F+++S  + A  A+KA N
Sbjct: 223 VNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
           + ++FS FG+I +   P    G   GY F+E+   Q A  A KA  +     +H  L
Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 741


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419
           + ++ ++F + G +VN Y P      L   Y F+EY + ++A  A+K  N  KL
Sbjct: 38  EELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKL 91


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 449
           + ++FS+FG I +       NG++ G  F+E+S  + A++A+   N   +  +  ++   
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298

Query: 450 FTDFQKYSDIPKEWE--PPAPH 509
               Q    +  ++   PP+PH
Sbjct: 299 QCKEQHKLHLQTQFNNPPPSPH 320



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 431
           +FS FGK+++       +G++ GY F+++ +  +   A    N   +  QH
Sbjct: 50  MFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQH 100


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
           ++ +FS++G + +        G + G+ F+ + NP+NA +A+++    +L  +  F+
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274



 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
           + +IF  +G+IV+      ENG + G+ F+ +SN + + +A +  N   +D
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKL 419
           + K+F  FG +     P  E GL  G+ F++++  ++A  A+      ++
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEI 350


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 431
           I   F  FG+I N        +G   GY  +EY   + A  A+ A N  +L  Q+
Sbjct: 111 ITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 235 PADTRLRLQRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEELDS 56
           P D   RL++ +N Q P   ++  PP+  +   + NP       L+Q+ V   H   L S
Sbjct: 58  PLDALSRLEKLNNEQEPQVEIIPNPPLEPVSYPVSNPTIVTRTDLVQNKVREHHRGVLSS 117

Query: 55  L 53
           L
Sbjct: 118 L 118


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 279 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
           +F+K+GK+V+ + P     G + G+ F+ Y     A +AV+  +   +D
Sbjct: 35  LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 279 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
           +F+K+GK+V+ + P     G + G+ F+ Y     A +AV+  +   +D
Sbjct: 35  LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503
           TFL++L TD   + +IP  W PP+
Sbjct: 438 TFLLDLTTDKPTWKEIPTSWAPPS 461


>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 126

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           + K+FS+FG++ N +         + GY ++ +++ ++A  AV+A N
Sbjct: 74  LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           + K+FS+FG++ N +         + GY ++ +++ ++A  AV+A N
Sbjct: 93  LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139


>At1g62870.1 68414.m07099 expressed protein
          Length = 796

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 396 KATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQICN 536
           KA  N  L+ QH ++VNL   FQ ++ + +++    P     SQ C+
Sbjct: 366 KALRN--LESQHQWMVNLSCQFQGFNSLIRDFVKELPLFKSVSQSCS 410


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           +F     +V+      +N  + GY ++ +SNP +A  A++A N
Sbjct: 68  LFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
           FS FG I++        G + GY F+++   ++A  A+   N   ++ +  F+
Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAV 395
           +FS FGK++         G + G+ F+E+ +  +A  A+
Sbjct: 36  MFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAM 74


>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
           I ++FS+ G++        +NG  +G   + Y    +A +A+K  NN  LD
Sbjct: 109 IRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLD 159


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 261 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 437
           +S I + F  +G I   +  T +      GY F+EY + ++   A K  +  K+D +   
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGR--- 207

Query: 438 LVNLFTDFQKYSDIPKEWEP 497
              +  D ++   +P  W P
Sbjct: 208 --RVLVDVERGRTVP-NWRP 224


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 442 TKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVS 335
           T+  CCL N  + +AF A+A  C    S+K    VS
Sbjct: 4   TRGSCCLVNALIAIAFLATAHLCEAGLSQKEQDKVS 39


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 267 VINKIFSKFGKI-VNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           V++K F++F    + +       G T GY F+ + NP + A A+K  N
Sbjct: 152 VLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 199


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 264 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
           S + ++FSKFG++           + +GY F+ + + ++A +A++ T+N
Sbjct: 16  SDLERLFSKFGRVKRV-------DMKSGYAFVYFEDERDAEDAIRRTDN 57


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 396 KATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPHHSRCSQIC 533
           KA  N  L+ QH ++VNL   FQ  + + K++    P     SQ C
Sbjct: 379 KALRN--LESQHQWMVNLSCQFQGLNSLIKDFVKELPLFKSVSQNC 422


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           + +IF +FG + + Y    E   + G  F++YS+ + A  A+   N
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           + +IF +FG + + Y    E   + G  F++YS+ + A  A+   N
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 282 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 440
           FS FG I++        G + GY F+++   + A  A+   N   L+ +  F+
Sbjct: 152 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204


>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
           spliceosomal protein U1A / U1snRNP-specific protein
           identical to GB:Z49991 U1snRNP-specific protein
           [Arabidopsis thaliana]
          Length = 250

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 255 KLQSVINKIFSKFGKIVNEY-YPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 410
           +L+  +N +FS+FGKI+    + T ++    G  ++ + N ++A+ A+   NN
Sbjct: 33  ELKKSLNAVFSQFGKILEILAFKTFKH---KGQAWVVFDNTESASTAIAKMNN 82


>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 611

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503
           TFL++L  D   + +IP  W PP+
Sbjct: 427 TFLLDLSMDIPAWREIPVPWTPPS 450


>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 601

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 432 TFLVNLFTDFQKYSDIPKEWEPPA 503
           TFL++L  D   + +IP  W PP+
Sbjct: 417 TFLLDLSMDIPAWREIPVPWTPPS 440


>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 130

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYY 317
           + K+FS+FG++ NE+Y
Sbjct: 74  LKKVFSEFGQVTNEHY 89


>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +3

Query: 345 GYIFLEYSNPQNAAEAVKA---TNNCKLDKQH 431
           GY FL++ +P++A +A++A    N  ++++ H
Sbjct: 39  GYAFLDFEDPRDARDAIRALDGKNGWRVEQSH 70


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 270 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 422
           I  IF K+G+IV+             Y F+E+ + ++A +A+K  +   LD
Sbjct: 23  IEDIFYKYGRIVDIELKVPPR--PPCYCFVEFEHSRDAEDAIKGRDGYNLD 71


>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
           {Escherichia coli O157:H7}; contains Pfam profiles
           PF01743: polyA polymerase family protein, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 881

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 255 KLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 407
           K+  +I+  F   G++V+    T  NGL     F+E+++   A +A+   N
Sbjct: 576 KMPDIID-FFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,395
Number of Sequences: 28952
Number of extensions: 259566
Number of successful extensions: 723
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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