Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0099
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    32   0.057
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.5  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   8.7  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   8.7  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   8.7  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +2

Query: 218 ERSPVQPSLNILPSQPRPADQLHIPPTGSKLRPLGHMYSQATIVSPSI 361
           +++P +PSL  +PS P   +Q    P+ S++R   +    + +V+PS+
Sbjct: 277 QQTPARPSLRSVPSYPSSNNQRR--PSASRVRSFSNYVKSSNVVNPSL 322


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 224 SPVQPSLNILPSQPRPADQLHIPPTG 301
           SP  P ++   + PRP D+  +PP G
Sbjct: 418 SPPPPPISSSSTTPRPDDKPSLPPRG 443


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 215 YERSPVQPSLNILPSQPRPADQLHIPP 295
           ++++ V  +LN++ S P   DQ+ +PP
Sbjct: 224 HQQTNVFDTLNVIDSYPTAPDQVALPP 250


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 468 AEGTKVIL-HEKGTIECLDVGNFPHPTSCKKFISCARMEGE 349
           A+G+++   + +     L   N  HP +CK    C  + GE
Sbjct: 42  AKGSRITSNYRRSLFNMLGYDNSVHPNNCKGSFLCPMLRGE 82


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 429 IECLDVGNFPHPTSCKKFISC 367
           I   D GN P   SC KFISC
Sbjct: 129 INDFDKGNKPLLISCIKFISC 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,625
Number of Sequences: 5004
Number of extensions: 53018
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)