Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0099
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171... 30 1.6
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 3.8
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 3.8
02_05_0253 - 27175082-27175299,27175395-27175890,27176009-271761... 28 5.0
09_02_0082 - 4060018-4061604 28 6.7
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 28 6.7
02_01_0646 + 4824243-4825139,4825220-4825852 28 6.7
12_02_1112 + 26162188-26162877,26163263-26163634 27 8.8
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888 27 8.8
06_03_0179 - 17604561-17606435 27 8.8
>04_01_0148 +
1710369-1710531,1711821-1712279,1712769-1712915,
1713004-1714170,1714378-1714430
Length = 662
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 324 CPKGLSFDPVGGICNWSAGLGCDGRMFKLGC 232
CP+G FDP +C + GL G + L C
Sbjct: 234 CPRGSIFDPAKRVCIYGHGLHPAGLLIGLSC 264
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -1
Query: 585 PGPPLSLYEKISKAPVRTLQAHRELCYYDDSDEKVANRYAEGTKVILHEKGTIECLDVGN 406
P P S K+SK + Q ++ +D +K N +K+ + + +E
Sbjct: 499 PSAPPSPTRKLSKVKTPSQQDRQQKEAKEDRQQKEPNPTGTPSKIAVSK---LEGETTQK 555
Query: 405 FPHPTSCKKFISCARMEGET 346
P+PT ++ +R+EGET
Sbjct: 556 KPNPTGTPSEMAVSRLEGET 575
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 519 RELCYYDDSDE---KVANRYAEGTKVILHEKGTIECLDVGNFPHPTSCKKFISCARM 358
+ELC D+ + R G V + GT++C D+ + PH + +C M
Sbjct: 345 KELCTKIDNQPDGTSILERIYAGVNVYYNYTGTVDCFDLNDDPHGMDGWDWQACTEM 401
>02_05_0253 -
27175082-27175299,27175395-27175890,27176009-27176142,
27176231-27176474
Length = 363
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 533 VLTGALDIFSYKLSGGPGSD 592
+ TG+ D+F Y LSGG G D
Sbjct: 167 ISTGSNDMFEYSLSGGNGDD 186
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 236 PSLNILPSQPRPADQLHIPPT 298
P+L LP+ P PA +H PPT
Sbjct: 48 PTLLFLPAPPVPAPLVHAPPT 68
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 544 GFGYLLVQAQWWSWVGLEW 600
G G++ + WWSW+ L W
Sbjct: 249 GGGWMRRRMDWWSWMTLNW 267
>02_01_0646 + 4824243-4825139,4825220-4825852
Length = 509
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 230 VQPSLNILPSQPRPADQLHIPPTGSKLRPLGHMYSQATIVSPSIRA 367
V P L + S R + +L +PP L +GH++ A +P+ RA
Sbjct: 16 VVPLLYLAASSSRRSGRLRLPPGPWALPVIGHLHHLALAGAPTHRA 61
>12_02_1112 + 26162188-26162877,26163263-26163634
Length = 353
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 218 ERSPVQPSLNILPSQPRPADQLHIPPTG 301
E P+ SL + P PAD L + PTG
Sbjct: 121 EGFPLLASLRVFPRHREPADALAVHPTG 148
>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
Length = 725
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 414 VGNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLG 262
+ + HP + + C GE I+ +E++ L+ GG W A LG
Sbjct: 432 ISSLSHP-GLVRLLGCCLDRGEQILVYEFVPNGTLAHHLAGGGLPWRARLG 481
>06_03_0179 - 17604561-17606435
Length = 624
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 224 SPVQPSLNILPSQPRPADQLHIPPTGSKLRPLGHMYSQATIVSPSIRAHDM 376
+P++ +L +L P P+ P T +L + S ++ SP R H++
Sbjct: 299 NPLEFALEVLDQMPHPSASSPEPKTTEELAAVTSSKSSSSSTSPCSRIHEV 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,040
Number of Sequences: 37544
Number of extensions: 376297
Number of successful extensions: 966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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