Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0099
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 47 1e-05
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 39 0.003
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 35 0.059
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 33 0.24
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.32
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9) 29 2.9
SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31) 29 3.9
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 3.9
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 28 6.8
SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8) 27 9.0
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 27 9.0
SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028) 27 9.0
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCDGRMFKL 238
GN+PHP CK +I+C+ +A+E CP GL+++ C+W C+G + L
Sbjct: 92 GNYPHPDFCKMYIACSNG-----IAYEMPCPAGLNWNDEKKYCDWPFNAPCEGWYYTL 144
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G++ HP +CK +I+C+ + +E CP GL+++ C+W C+
Sbjct: 68 GDYAHPENCKMYITCSNK-----ITYERQCPAGLNWNDAKKWCDWPKNAPCE 114
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGL-GCDG 253
GN+ ++C +I+C+ G TI CP GL+F+ G+C++ + + GC G
Sbjct: 322 GNYADSSNCNLYITCSN--GFTIANRH--CPTGLAFNEAIGMCDYPSNVPGCSG 371
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCDGR 250
G++ P++C FI+C+ A++ CP L FD C W + C R
Sbjct: 603 GDYADPSNCNGFITCSNG-----YAYKRDCPFNLKFDTKKLECEWPNKVNCKSR 651
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCDGR 250
G + +C F+ C+ + CP L +DP G C W+ + C R
Sbjct: 524 GKYADANNCNGFVMCSNG-----YIYYMDCPSNLRYDPAKGRCEWADTVDCGQR 572
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGL 265
GN+ HP+ C +I+C+ +A E CP GL+++ V C+ A L
Sbjct: 342 GNYAHPSKCDMYITCSNG-----IAHEMPCPAGLNWNDVTKECDGRATL 385
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 423 CLDV--GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
CL + G++ P +C +F C A+ + CP GL + C+W + CD
Sbjct: 22 CLSLPNGHYHDPRNCSRFYQCDAFHK----AFLHSCPSGLKWSVTKTTCDWPRYVDCD 75
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G++ P +C +F C A+ + CP GL + C+W + CD
Sbjct: 121 GHYHDPRNCSRFYQCDAFHK----AFLHSCPSGLKWSVTKTTCDWPRYVDCD 168
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G++ P C KF C A+ + CP GL + C+W + CD
Sbjct: 894 GHYADPRDCSKFYQCDAFHR----AFLHRCPAGLKWSVKKTACDWPRYVDCD 941
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G++ P C +F C A+ + CP GL + C+W + CD
Sbjct: 999 GHYADPMDCSRFYQCDAFHR----AFLHRCPAGLKWSVKKTTCDWPRYVDCD 1046
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G++ P C +F C A+ + CP GL + C+W + CD
Sbjct: 1244 GHYADPRDCSRFYQCDAFHR----AFLHRCPAGLKWSVKKTACDWPRYVDCD 1291
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G++ P C +F C +T + + CP GL + C+W + CD
Sbjct: 1144 GHYADPRDCSRFYQCDAFH-KTFL---HRCPAGLKWSVKKTACDWPRYVDCD 1191
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/52 (25%), Positives = 20/52 (38%)
Frame = -1
Query: 411 GNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNWSAGLGCD 256
G + P C +F C A+ + C GL + C+W + CD
Sbjct: 789 GYYADPRDCSRFYQCDAFHR----AFLHRCSPGLKWSITKTTCDWPRNVDCD 836
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 203 RTTVYERSPVQPSLNILPSQPRPADQLHIPPTGSK--LRPLG-HMYSQATIVSPSIRAHD 373
R + + P + LP Q PAD ++ PP SK +P G Q+ + P I+
Sbjct: 2812 RARAKSKDSLTPQASPLPGQGPPADWMNSPPAASKPGPKPRGKKSKKQSDLDDPEIQLQQ 2871
Query: 374 MNFLQEV 394
Q++
Sbjct: 2872 QRLQQQI 2878
>SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)
Length = 356
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 450 SPSYPRRTGWLLSRRCHHNNIVHDGPVKSSLGLWISS 560
SP YP+ G +LSR H + GLW SS
Sbjct: 43 SPPYPKLLGQVLSRELKHRAFYRQRRRQGREGLWASS 79
>SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)
Length = 522
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 203 RTTVYERSPVQPSLNI----LPSQPRPADQLHIPPTGSKLRPLGHMYS--QATIVSPSI 361
RTT S QP++N + S P + LH+PPT R L + T+VSP I
Sbjct: 116 RTTAISTSAFQPTINSSLLDINSSPNSSSILHVPPT-LDTRILNQFWPPLNFTLVSPCI 173
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 348 TIVAWEYICPKGLSFDPVGGICNWSAGLGCDGRMFKLGCTGDR 220
TIV + IC K +SF + + + + GCD L T DR
Sbjct: 702 TIVTSQPICSKNISFSVMSEVFHGAMACGCDSVGTYLNSTCDR 744
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 200 YRTTVYERSPVQPSLNILPSQPRPADQL 283
++ T ER PS+ +P QPRP+ L
Sbjct: 196 FQMTPVERPKTAPSVTAVPRQPRPSSSL 223
>SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 286 YTADGIEAKAFRTYVLPGYDCLSFHTRTRYELLTGGRVREVTHI*AFDCTFL 441
+T GI A +FR+ + G++ L R+R + R+R +FD +L
Sbjct: 74 HTIYGIVAYSFRSAFVSGFEKLRIRQRSRRIRVDDSRIRNKKFADSFDSEYL 125
>SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)
Length = 238
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 200 YRTTVYERSPVQPSLNILPSQPRPADQLHIPPTGS 304
YR + E S V PS P++PRP + + T S
Sbjct: 177 YRNGLMEPSRVLPSHESRPARPRPTHSIRLQGTAS 211
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +2
Query: 200 YRTTVYERSPVQPSLNI---------LPSQPRPADQLHIPPTGSKLRP 316
+++ + SP QPSL + LPS P+P+ Q+H PP S P
Sbjct: 206 FKSAAFPSSP-QPSLQVRTPLFKSAALPSSPQPSLQVHTPPFKSTPLP 252
>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
Length = 401
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 399 EGSYPHLSIRLYLSRVESPSYPRRTGWLLSRRCHHNNIVHDGPVKSSLGLW 551
+G P L RL + ++ + PRR+ L RC + + V L W
Sbjct: 281 QGKSPELGFRLTIRKIINVEKPRRSSKLERNRCLKHEVSQSSLVFEILQSW 331
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -1
Query: 384 KKFISCARMEG---ETIVAWEYICPKGLSFDPVGGICNWS 274
KK I A+++G +T++ + PKG+ DP G+ W+
Sbjct: 168 KKAIEVAKLDGSFRKTLIKDNLVGPKGIVVDPRTGLMFWT 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,435,803
Number of Sequences: 59808
Number of extensions: 418193
Number of successful extensions: 970
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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