Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0099
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 34 0.091
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 32 0.37
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 31 0.49
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 31 0.49
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 31 0.49
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 31 0.49
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 29 2.0
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 29 2.0
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 29 2.0
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 29 2.6
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z74027-1|CAA98421.1| 136|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 33.9 bits (74), Expect = 0.091
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 444 HEKGTIECLDVGNF-PHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICNW-SA 271
H + EC + G+F +C+ F C + G +V CP G F+P+ +C+W SA
Sbjct: 1238 HGQTNGECSEHGSFIADANNCEVFYRC--VWGRKVVM---TCPSGTVFNPLLSVCDWPSA 1292
Query: 270 GLGCDGR 250
C G+
Sbjct: 1293 VPSCSGQ 1299
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 426 ECLDVGNFPHPTSCKKFISCARMEGETIVAWEYICPKGLSFDPVGGICN 280
+C G F P+ C KFI C + G +++ + CP GLSF +C+
Sbjct: 565 KCTKDGFFGVPSDCLKFIRC--VNG---ISYNFECPNGLSFHADTMMCD 608
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 324 CPKGLSFDPVGGICNWSAGLGCDGRMFKLGC 232
CPKG+ DP+ G C AGL G +GC
Sbjct: 520 CPKGIGCDPITGECTCPAGL--QGANCDIGC 548
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 324 CPKGLSFDPVGGICNWSAGLGCDGRMFKLGC 232
CPKG+ DP+ G C AGL G +GC
Sbjct: 520 CPKGIGCDPITGECTCPAGL--QGANCDIGC 548
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 324 CPKGLSFDPVGGICNWSAGLGCDGRMFKLGC 232
CPKG+ DP+ G C AGL G +GC
Sbjct: 520 CPKGIGCDPITGECTCPAGL--QGANCDIGC 548
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 324 CPKGLSFDPVGGICNWSAGLGCDGRMFKLGC 232
CPKG+ DP+ G C AGL G +GC
Sbjct: 520 CPKGIGCDPITGECTCPAGL--QGANCDIGC 548
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1263 KPFYEKIRTYVCSFWN 1278
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1303 KPFYEKIRTYVCSFWN 1318
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1364 KPFYEKIRTYVCSFWN 1379
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1263 KPFYEKIRTYVCSFWN 1278
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1303 KPFYEKIRTYVCSFWN 1318
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1364 KPFYEKIRTYVCSFWN 1379
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 RPWYDKIKTQKCCFWN 168
+P+Y+KI+T C FWN
Sbjct: 1303 KPFYEKIRTYVCSFWN 1318
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = -1
Query: 507 YYDDSDEKVANRYAEGTKVILHEKGTIECLDVGNFPHPTSCKKFISCARMEGETIVAWEY 328
Y+++S K + + G + L GNFP C + RMEG ++ W
Sbjct: 127 YHNNSRTKNTLDWVHTSLKCCGANGCEDFLPAGNFPTSCECGTKNAMVRMEGCALITWAV 186
Query: 327 ICPKGLSFDPVGGIC 283
L +G IC
Sbjct: 187 FEDGTLQVAFLGLIC 201
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = -1
Query: 507 YYDDSDEKVANRYAEGTKVILHEKGTIECLDVGNFPHPTSCKKFISCARMEGETIVAWEY 328
Y+++S K + + G + L GNFP C + RMEG ++ W
Sbjct: 138 YHNNSRTKNTLDWVHTSLKCCGANGCEDFLPAGNFPTSCECGTKNAVVRMEGCALITWAV 197
Query: 327 ICPKGLSFDPVGGIC 283
L +G IC
Sbjct: 198 FEDGTLQVAFLGLIC 212
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 224 SPVQPSLNILP-SQPRPADQLHIPPTGSKLRP 316
S + PS +++P SQPRP+ PPT + +RP
Sbjct: 628 SVIAPSSSVVPKSQPRPSPTTR-PPTRATIRP 658
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 30 LKTVLKTLSTYFYGATLIDSLSADTYSEMVLLR 128
++ + K L T+F T DS ADTY +V L+
Sbjct: 308 VERITKLLRTFFSNQTEADSTWADTYKALVNLK 340
>Z74027-1|CAA98421.1| 136|Caenorhabditis elegans Hypothetical
protein C13G3.1 protein.
Length = 136
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 347 VSPSIRAHDMNFLQEVG*GKLPTSKHSIVPFSCRIT 454
+SPS+R NF EV LP + SI P +T
Sbjct: 45 LSPSVRRSQFNFSSEVTKSALPKVRASIPPLKRALT 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,611
Number of Sequences: 27780
Number of extensions: 305827
Number of successful extensions: 861
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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