Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0099
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 495 SDEKVANRYAEGTKVI 448
           SDEK++  YA G K+I
Sbjct: 133 SDEKISTLYALGAKII 148


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 495 CHHNNIVH 518
           CHHN +VH
Sbjct: 25  CHHNGVVH 32


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 597 LQSDPGPPLSLYEKI 553
           +QSD G PLSL  K+
Sbjct: 440 MQSDDGGPLSLKNKV 454


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 200 YRTTVYERSPVQPSLNILPSQPRPADQLHIPPTGSKLRPLG 322
           +RT  Y    V+  + +     RP+D     P    + PLG
Sbjct: 286 FRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLG 326


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 200 YRTTVYERSPVQPSLNILPSQPRPADQLHIPPTGSKLRPLG 322
           +RT  Y    V+  + +     RP+D     P    + PLG
Sbjct: 286 FRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLG 326


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 LPSQPRPADQLHIPPTGSKL 310
           +P+   PAD  +  P GSK+
Sbjct: 273 IPTSENPADYRYFCPDGSKV 292


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 LPSQPRPADQLHIPPTGSKL 310
           +P+   PAD  +  P GSK+
Sbjct: 273 IPTSENPADYRYFCPDGSKV 292


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 LPSQPRPADQLHIPPTGSKL 310
           +P+   PAD  +  P GSK+
Sbjct: 273 IPTSENPADYRYFCPDGSKV 292


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 451 HLRTLGVPV 477
           HLR+LG+PV
Sbjct: 340 HLRSLGIPV 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,139
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)