Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0099
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    30   1.0  
At1g10490.1 68414.m01181 expressed protein contains Pfam profile...    29   2.4  
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family...    29   2.4  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    28   5.6  
At4g09570.1 68417.m01575 calcium-dependent protein kinase, putat...    28   5.6  
At1g35670.1 68414.m04435 calcium-dependent protein kinase 2 (CDP...    28   5.6  
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide...    27   9.7  

>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = -1

Query: 516 ELCYYDDSDEKVANRYAEGTKVILHEKGTIECLD--VGNFPHPTSCKKFISCARMEGETI 343
           E+ Y D+ +E++   + +   V L E+G+I+ L   +G+  +    K F+     EG   
Sbjct: 15  EIKYVDECEERLRRLFDQALLVFLEEEGSIKPLPAVIGDGKNVDLFKLFVLVREREGFDT 74

Query: 342 VA----WEYICPKGLSFD 301
           V+    WE +  K L FD
Sbjct: 75  VSRKRLWEVVAEK-LGFD 91


>At1g10490.1 68414.m01181 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1028

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 573 LSLYEKISKAPVRTLQAHRELCYYDDSDEKVANRYAEGTKVILHEKGTIECLDVGN-FPH 397
           L   E+ S+APV  ++     C +   +   + RYA G  +     G + CLDV N  P+
Sbjct: 427 LQQLEEQSRAPVTGVEGSLSGCLFKKIELSESIRYASGDPIESWLNGLL-CLDVANCLPN 485

Query: 396 P 394
           P
Sbjct: 486 P 486


>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
           protein Common family member: At2g32840 [Arabidopsis
           thaliana]
          Length = 332

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 224 SPVQPSLNILP--SQPRPADQLHIPPTGSKLRPLGH--MYSQATIVSPSIRAHDMNFLQE 391
           +PV P   + P  SQP PA     PPT   + PL H   + Q +  S ++ AH +   ++
Sbjct: 24  TPVTPVNTVRPPPSQPPPAPPPLPPPTYRPIAPLRHPNPFQQQSAYSNNLYAHSIPVRRQ 83

Query: 392 V 394
           +
Sbjct: 84  I 84


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 465 RRTGWLLSRRCHHNNIVHDGPVKSSLGLW 551
           RRT W++    HH+ IV  G +   + LW
Sbjct: 148 RRTPWVVRFHPHHSEIVASGSLDLEVRLW 176


>At4g09570.1 68417.m01575 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 501

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -1

Query: 603 VPLQSDPGPPLS------LYEKISKAPVRTLQAHRELCYYDDSDEKVA 478
           +  +SDP P +S      +Y+ + ++P + + AH  LC+    DE  A
Sbjct: 242 IDFKSDPWPTISEGAKDLIYKMLDRSPKKRISAHEALCHPWIVDEHAA 289


>At1g35670.1 68414.m04435 calcium-dependent protein kinase 2 (CDPK2)
           identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains
           protein kinase domain, Pfam:PF00069; contains EF hand
           domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 495

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = -1

Query: 594 QSDPGPPLS------LYEKISKAPVRTLQAHRELCYYDDSDEKVA 478
           +SDP P +S      +Y+ + ++P + + AH  LC+    DE+ A
Sbjct: 246 KSDPWPTISEAAKDLIYKMLERSPKKRISAHEALCHPWIVDEQAA 290


>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
           identical to phytochrome A supressor spa1 (GI:4809171)
           [Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
           PF00400) (1 weak)
          Length = 1029

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 487 ESSQPVRRGYEGDSTRERYNRMLRCG*LPSPDLL*EVHIVCA 362
           +SS  +   +EG     RY++   CG + S DLL    +VC+
Sbjct: 680 KSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCS 721


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,616
Number of Sequences: 28952
Number of extensions: 291336
Number of successful extensions: 728
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)