Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0097
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    29   0.41 
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    28   1.3  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   3.8  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   5.1  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    25   8.9  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    25   8.9  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -2

Query: 414 VHCN-----VENPDITYPKSHWK*TVSPK 343
           VHC+     +E+P +T PK  WK TV PK
Sbjct: 187 VHCSYEAGILEDPSMTPPKDMWKLTVDPK 215


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 270 QDLFLYMYLRLFHRFQIVQLRNLLFH 193
           Q+   Y+Y  LFH FQ   +R+LL+H
Sbjct: 108 QENLSYVYSPLFHSFQDWVVRSLLYH 133


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 255 YMYLRLFH---RFQIVQLRNLLFHWKNIIQIQDYTRMKSCRVCLSTSAHTLRCFRC 97
           Y Y+  FH   RF I Q    + H  N  + +D       R+C+ T  H   CF C
Sbjct: 29  YTYIVSFHNFVRFPIKQRNTSIHHAPNKRKRKDEAPF---RLCIYTLFHAHTCFSC 81


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 452 DIQEQFHSKFHLKCIVMSKILTLHIQSHIGNELYHRSD 339
           D  EQ H+ FH K  +    +  H+Q H  ++ + + D
Sbjct: 684 DELEQHHANFHNKAGISQSNIPPHLQEHRQSQQHFQQD 721


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 458 HIDIQEQFH-SKFHLKCIVMSKILTLHIQSHIGNELYHRSDKIFLSI 321
           H D+ +    ++  +K   + KIL+LH++    NE     DK+F +I
Sbjct: 290 HCDVCKSLQEAEKRMKIKKLPKILSLHLKRFKYNETQEGHDKLFYTI 336


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 330 FVDKSCPFSGGAS--GGHMTGT 271
           +VDK CPF G  S  G  +TGT
Sbjct: 50  YVDKKCPFVGQVSIRGRILTGT 71


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 330 FVDKSCPFSGGAS--GGHMTGT 271
           +VDK CPF G  S  G  +TGT
Sbjct: 50  YVDKKCPFVGQVSIRGRILTGT 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,987
Number of Sequences: 5004
Number of extensions: 59696
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)