Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0097
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    29   0.049
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    27   0.15 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.8  

>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = +3

Query: 87  INECSENNGGCEQKCLNTP------GNFSCACNLGFELYSSNGTAGFSIELSETGERDGD 248
           +N+C   NG C   CL  P         SCAC  G +L  S+G     +E       DGD
Sbjct: 33  MNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGL--MCVEKDSIHSIDGD 89

Query: 249 TYKGI 263
              G+
Sbjct: 90  EENGL 94


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +3

Query: 87  INECSENNGGCEQKCLNTP------GNFSCACNLGFELYS 188
           +N+C   NG C   CL  P         SCAC  G +L S
Sbjct: 33  MNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLS 72


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 482 GQIKLHIEHIDIQEQFHSKFHLKCIVMSKILTLHIQSHIGNELY 351
           GQ+ +H+     ++ +  K   K    SK L +H ++H G + Y
Sbjct: 189 GQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPY 232


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/87 (20%), Positives = 35/87 (40%)
 Frame = -2

Query: 438 VPFQVPLKVHCNVENPDITYPKSHWK*TVSPK**DFFVDKSCPFSGGASGGHMTGTQDLF 259
           VP ++P        + D+ +  ++W+  +      +      PF G     +     +LF
Sbjct: 177 VPIEIPRDY--TASDLDVEHRVAYWREDIGINLHHWHWHLVYPFEGDIRIVNKDRRGELF 234

Query: 258 LYMYLRLFHRFQIVQLRNLLFHWKNII 178
            YM+ ++  R+   +L N L   K  I
Sbjct: 235 YYMHQQIMARYNCERLCNRLGRVKRFI 261


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -2

Query: 237 FHRFQIVQLRNLLFHWKNIIQIQDYTRMKSCRVCLSTSAH 118
           FH   I      L+H K ++ +   T + SC +   +  H
Sbjct: 102 FHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPH 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,041
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)