Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0096
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.67 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.3  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 109 HTVHLMMSGYRRPWTSGMPGAEPS 38
           +T+H+   G+  P+T  M G E S
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVECS 509


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 237 TPSRGGRYPIRPIVSRITIHWPSFYN 314
           TPS+      +P+ +   + +PS+YN
Sbjct: 341 TPSQSPNQIYQPVTNLTNLTYPSYYN 366


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 73  GDGNHSSSGGPYARLHTRATTKKKD 147
           G GN+   GGP + +    T K  D
Sbjct: 530 GSGNNQPPGGPSSHVSAVLTCKVCD 554


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,544
Number of Sequences: 336
Number of extensions: 3062
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)