Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0096
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    27   2.1  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   2.8  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    26   3.7  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   6.5  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   8.5  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 121 TRATTKKKDLHLRHDNCPNYR 183
           T +T KK+ LH+++D  P+YR
Sbjct: 373 TASTPKKRILHVQNDYVPHYR 393


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 453 PFPIQVAQLLERAIGCGP 400
           P PI  A+ LE+  GCGP
Sbjct: 216 PLPIDSAEQLEKMPGCGP 233


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 37  SLALPLAFLKSMGDGNHSSSGGPYARLHTRATTKKKDLHLRHDNCPNYRVNLSTL 201
           ++A  LA+  +MG G +SSS      LH    T ++++  +H   PN++ +L  L
Sbjct: 162 NIASSLAYFSAMGVGAYSSSKAALVSLH---ETLEEEVLSQH---PNFKFSLYVL 210


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 333 LALPNLIALQAHSPFASWRNNEKARTR 413
           L LPNL AL  H     + +NEK   R
Sbjct: 46  LELPNLSALNDHLDVTHFNDNEKIHKR 72


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 467 TLTICHSPFRLRNCWKGRSGAGLFVITPAGKRGMCL 360
           ++ +CH  FRL    +G S   L  ++P G  G C+
Sbjct: 450 SICLCHIIFRLAFKKQGHSLKELGFVSPMGIWGSCI 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,360
Number of Sequences: 5004
Number of extensions: 47541
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)