Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0096
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254...    32   0.23 
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043     31   0.53 
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    30   0.92 
11_06_0716 - 26562084-26562230,26562874-26562983,26563166-26563268     28   3.7  
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844...    28   3.7  
01_06_0663 - 30991390-30992340                                         28   3.7  
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093...    28   4.9  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    27   6.5  

>10_01_0243 +
           2538994-2539193,2539297-2539471,2539568-2539726,
           2540109-2540205,2540420-2540490,2541196-2541247,
           2541778-2541826,2541965-2542102,2542653-2542772,
           2542861-2542990
          Length = 396

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 31  GSSLALPLAFL-KSMGDGNHSSSGGPYARLHTRATTKKKDLHLRHDNC 171
           G +L  P+  + + M +G+ +SS G + +++ RATT +KD     D+C
Sbjct: 277 GFALIFPIDMVGEKMQNGSLNSSDGDFTKINLRATTYRKDTSRIVDSC 324


>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
          Length = 436

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 481 LPKY*RLQFAIPHSGCATVGKGDRVRAFSLLRQLAKG 371
           +PKY   Q+ +P +G A  G G R     L RQLA G
Sbjct: 137 VPKYMLYQYGLPAAGAANDGSGGRADRRFLDRQLAHG 173


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 329 NPGVTQLNRLASTFPFCQLA**RKGPHPIALSNSC 433
           N  +  L++L ST P C L   RK P P + +N+C
Sbjct: 116 NNDIIHLHQLISTQPHCALVETRKVPEPNSANNAC 150


>11_06_0716 - 26562084-26562230,26562874-26562983,26563166-26563268
          Length = 119

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 394 TKRPAPDRPFQQLRNLNGEWQIVSVNI 474
           TK P  + P  +  N NG+WQ V+V I
Sbjct: 72  TKAPITESPAFKHYNYNGQWQTVTVRI 98


>02_05_1240 +
           35181983-35182615,35183025-35183856,35183936-35184497,
           35184581-35184722,35184832-35184939,35185055-35185267,
           35185355-35185465,35185684-35185878,35186094-35186268,
           35186379-35186413
          Length = 1001

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 246 RGGRYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQAHSPFASWR-NNEKARTRSPF 422
           +G R  +  + S   +H  SF +   G    + +   +++H  + S+  +NE    R P 
Sbjct: 49  QGARTAVGSLFSAAPVHVDSFVDPSNGGVGDVLSDEEIRSHPAYLSYYYSNEHLNPRLPP 108

Query: 423 PTVAQPEWGMA 455
           P V++ +W +A
Sbjct: 109 PMVSKEDWRVA 119


>01_06_0663 - 30991390-30992340
          Length = 316

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 142 KDLHLRHDNCPNYRVNLSTLEGEAEFYIVLLSHPRGGAGTQ 264
           KDL +    C    + L  L    + Y+ LL+H  GG GTQ
Sbjct: 257 KDLGICLSECQAMGLALPGLALAHQLYVSLLAHGEGGLGTQ 297


>01_05_0018 -
           17208358-17208367,17208485-17208537,17209321-17209383,
           17209971-17210045,17210090-17210104,17210983-17211045,
           17211129-17211218,17211396-17211714,17211814-17211860,
           17211949-17212054,17212539-17212592,17212806-17212912,
           17212996-17213160,17213383-17213476,17213572-17213636,
           17213841-17213969
          Length = 484

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 43  ALPLAFLKSMGDGNHSSSGGPYARLHTRATTKKKDLHLRHDNCPNYRVNLSTLEG---EA 213
           A+  + +  +G G  SSS G Y  LH   T  +  L +   N  N       L G   + 
Sbjct: 336 AISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEANTANNLETCGILAGTLKKR 395

Query: 214 EFYIVLLSHPR 246
            FY+  L  P+
Sbjct: 396 TFYVTTLIIPK 406


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 369 SPFASWRNNEKARTRSPFPTVAQPEWGMANCK 464
           S   +W N +K RT S   TVA P   ++N K
Sbjct: 448 SSLMNWLNGKKKRTGSVHHTVAHPAGNLSNKK 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,047
Number of Sequences: 37544
Number of extensions: 387380
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)