Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0096
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 101 PPDDEWLPSPMDFRNARGRAKLLPTAKTEVY 9
           PPD  W P  + F NA G  ++   +   +Y
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 134


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 323 SHDVVKRRPVNCNTTHYRANWVPAP 249
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 101 PPDDEWLPSPMDFRNARGRAKLLPTAKTEVY 9
           P D  W P  + + NA G  ++    K  VY
Sbjct: 106 PSDHIWRPDIVLYNNADGNYEVTLMTKATVY 136


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 101 PPDDEWLPSPMDFRNARGRAKLLPTAKTEVY 9
           P D  W P  + + NA G  ++    K  +Y
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIY 136


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +1

Query: 73  GDGNHSSSGGPYARLHTRATTKKKDLHLRHDN 168
           GD N+      Y     R   +KK    R DN
Sbjct: 110 GDDNNDYEDNDYGNQDNRNDRRKKTFAAREDN 141


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  LKSMGDGNHSSSGGP 105
           L+  GDG+   +GGP
Sbjct: 139 LRHKGDGSPGGNGGP 153


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  LKSMGDGNHSSSGGP 105
           L+  GDG+   +GGP
Sbjct: 139 LRHKGDGSPGGNGGP 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,251
Number of Sequences: 438
Number of extensions: 3555
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)