Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0096
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32440.2 68417.m04618 agenet domain-containing protein contai... 31 0.33
At4g32440.1 68417.m04617 agenet domain-containing protein contai... 31 0.33
At1g22800.1 68414.m02848 expressed protein similar to Biotin syn... 29 1.3
At1g25380.1 68414.m03150 mitochondrial substrate carrier family ... 29 2.4
At3g47130.1 68416.m05117 F-box family protein-related contains w... 27 5.4
At1g26380.1 68414.m03218 FAD-binding domain-containing protein s... 27 5.4
At3g09510.1 68416.m01130 hypothetical protein 27 7.2
At1g35220.1 68414.m04368 expressed protein 27 7.2
At1g26390.1 68414.m03219 FAD-binding domain-containing protein s... 27 7.2
At5g45340.2 68418.m05566 cytochrome P450 family protein similar ... 27 9.5
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 27 9.5
At4g35335.1 68417.m05021 nucleotide-sugar transporter family pro... 27 9.5
At2g21185.1 68415.m02513 expressed protein 27 9.5
>At4g32440.2 68417.m04618 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 393
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 84 PLIIRWTVCSSAYKGNNKKKRP---SPQTRQLS*LSCKPQHSGGR 209
P W+ C+ + GN KK R Q +++ +SC+P++ GG+
Sbjct: 175 PSPYNWSECAESCTGNPKKMRSLEKEGQQQKVDAISCRPENRGGK 219
>At4g32440.1 68417.m04617 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 377
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 84 PLIIRWTVCSSAYKGNNKKKRP---SPQTRQLS*LSCKPQHSGGR 209
P W+ C+ + GN KK R Q +++ +SC+P++ GG+
Sbjct: 175 PSPYNWSECAESCTGNPKKMRSLEKEGQQQKVDAISCRPENRGGK 219
>At1g22800.1 68414.m02848 expressed protein similar to Biotin
synthesis protein bioC. {Serratia marcescens}
(SP:P36571); ESTs gb|Z34075, gb|Z34835 and gb|AA404888
come from this gene
Length = 355
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 112 EHTVHLMMSGYRRPWTSGMPGAEPSCCLPLKP 17
E +V L++S WT+ +PG+ C L LKP
Sbjct: 165 ESSVDLIISSLGLHWTNDLPGSMIQCKLALKP 196
>At1g25380.1 68414.m03150 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 363
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 296 VNCNTTHYRANWVPAPPRGCDSNTI*NSASPSRVLRFT 183
++C T +R+ +P RGC +N + +PS V+ FT
Sbjct: 262 IDCITKVFRSEGIPGLYRGCATNLL--RTTPSAVITFT 297
>At3g47130.1 68416.m05117 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain;
Length = 360
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 121 YADEHTVHLMMSGYRRPWTSGMPGAEPSCCLPLK 20
+ D H LM+ P+ S + SCC+P K
Sbjct: 77 FQDFHGKKLMLVSSPNPYVSSSSSSSSSCCVPYK 110
>At1g26380.1 68414.m03218 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 535
Score = 27.5 bits (58), Expect = 5.4
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +1
Query: 37 SLALPLAFLKSMGDGNHSSSGGPYARLHTRATTKKKDLHLRHDNCPNYRVNLSTLEGEAE 216
+LA P ++G G H S GG + TT + + +N ST+ GE
Sbjct: 164 TLAFPAGICATVGAGGHISGGGYGNLMRKFGTTVDHVIDAELVDVNGKLLNRSTM-GEDL 222
Query: 217 FYIVLLSHPRGGAGTQFAL 273
F+ + RGG G F +
Sbjct: 223 FWAI-----RGGGGASFGV 236
>At3g09510.1 68416.m01130 hypothetical protein
Length = 484
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 297 WPSFYNVVTGKTLALPNLIALQAHSPFASWRNNEKARTRSPFPT 428
W + NVV K P+ L A + W N ++ ++P PT
Sbjct: 273 WKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPT 316
>At1g35220.1 68414.m04368 expressed protein
Length = 1028
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 471 INAYNLPFPIQVAQLLERAIGCGPFRYY 388
+N Y FP +A+ + R + PFRYY
Sbjct: 100 VNNYPQLFPYHLAEYVCRVMRISPFRYY 127
>At1g26390.1 68414.m03219 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 530
Score = 27.1 bits (57), Expect = 7.2
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +1
Query: 13 TSVLAVGSSLALPLAFLKSMGDGNHSSSGGPYARLHTRATTKKKDLHLRHDNCPNYRVNL 192
T+V V +LA P ++G G H S GG + T + + + +N
Sbjct: 156 TNVNDVSQTLAFPAGVCATVGAGGHISGGGYGNLMRKYGITVDHVIDAQIIDVNGKLLNR 215
Query: 193 STLEGEAEFYIVLLSHPRGGAGTQFAL 273
+T+ GE F+ + RGG G F +
Sbjct: 216 ATM-GEDLFWAI-----RGGGGGSFGV 236
>At5g45340.2 68418.m05566 cytochrome P450 family protein similar to
SP|Q42569|C901_ARATH Cytochrome P450 90A1 (SP:Q42569)
[Arabidopsis thaliana]; contains Pfam profile: PF00067:
Cytochrome P450
Length = 446
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 73 GDGNHSSSGGPYARLHTRA-----TTKKKDLHLRHDNCP 174
G G HS G A+L TTK + +HL++DN P
Sbjct: 405 GSGIHSCPGNELAKLEISVLIHHLTTKYRLVHLQNDNSP 443
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 218 NSASPSRVLRFTR*LGQLSCLR--*RSFFFVVALVCRRAYGPPDDEWLPSPMD 66
N +PS V R+ +G +SCL+ R FV A + P D E P+P D
Sbjct: 272 NIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPNDGE-SPAPAD 323
>At4g35335.1 68417.m05021 nucleotide-sugar transporter family
protein similar to SP|O77592 UDP N-acetylglucosamine
transporter (Golgi UDP-GlcNAc transporter) {Canis
familiaris}, SP|P78382 CMP-sialic acid transporter {Homo
sapiens}; contains Pfam profile PF04142:
Nucleotide-sugar transporter
Length = 302
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 323 WENPGVTQLNRLASTF 370
W+N GVT NRL++TF
Sbjct: 94 WKNEGVTDDNRLSTTF 109
>At2g21185.1 68415.m02513 expressed protein
Length = 93
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 222 IKFSLALQSAE-VYTIIRTIVVSEVKVFFFCCCPCMQTSIRST 97
+KF +A+ S E V + + V +F C C++TS RST
Sbjct: 37 VKFEVAVSSGEDVLSWLLLAAVPLALLFAVRCLSCLETSKRST 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,497
Number of Sequences: 28952
Number of extensions: 278015
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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