Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0095
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 187 9e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 83 3e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 78 8e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 3e-15
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 62 8e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 3e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 8e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.024
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.1
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 26 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 187 bits (456), Expect = 9e-49
Identities = 89/114 (78%), Positives = 99/114 (86%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQPS LG++ GIHE TYNSI+KCDVDIR+ ++ TTMYPGIADRMQKEI ALA
Sbjct: 262 FQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALA 321
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
PS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 322 PSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 83.0 bits (196), Expect = 3e-17
Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
F P +G +A G+H + SI+ D+D+R T ++ +T+ G +R E+ A++
Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAIS 326
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 327 GKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 78.2 bits (184), Expect = 8e-16
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 7/108 (6%)
Frame = -1
Query: 561 GIHEPTYNSIIKCDVDIRRT*RQPGIV-RWTTMYPGIADRMQKEITALAPSTMKIKIIAP 385
GI + N I +CDVDIR + IV T++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 384 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 259
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 76.6 bits (180), Expect = 3e-15
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Frame = -1
Query: 561 GIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALAP-STMKIKIIA 388
G+HE Y SI+ CD ++R +V T++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 387 PPER-KYSVWIGGSILASLSTFQQMWISKQEYDESG 283
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 61.7 bits (143), Expect = 8e-11
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 13/117 (11%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITAL- 421
FQP +G + G+ E +++I DVDIR+ + ++ ++MY G+ R++KEI L
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLW 321
Query: 420 -------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 283
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 322 FERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 43.2 bits (97), Expect = 3e-05
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGI-VRWTTMYPGIADRMQKEITALA 418
F PS + ++ GI E S+ +I+ + + + +PG R+ E+ +LA
Sbjct: 288 FSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLA 347
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 262
P+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 348 PANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 38.3 bits (85), Expect = 8e-04
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRWTT-MYPGIADRMQKEITALA 418
F PS +G+ GI E + + + ++ ++ ++ PG+ R+++E+T++
Sbjct: 603 FSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIM 662
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 271
P I + W G S + F+ ++++EY E GP +
Sbjct: 663 PVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 402 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 265
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.024
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -1
Query: 486 IVRWTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 316
IV +PG A +++ I + + I +I PP + ++ W G I + ++
Sbjct: 535 IVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSEL 594
Query: 315 WISKQEYDESGPSIVHRK 262
WI ++ G ++ K
Sbjct: 595 WIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 363 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 262
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 437 FCIRSAIPGYMVVHRTIPGWRQVLRMSTSHFMMELYVGSWMPQ 565
FC RS P +++R +P W ++ T+ + + W+PQ
Sbjct: 395 FCWRSDTP---LIYRAVPSWFVRVKEITNEMVENVMSTHWVPQ 434
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 527 FMMELYVGSWMPQAFIPKNE 586
FM LYV S++ Q FI KN+
Sbjct: 136 FMFGLYVASFIVQIFIAKND 155
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 371 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 276
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 438 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 328
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 304 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 390
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,495
Number of Sequences: 5004
Number of extensions: 50633
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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