Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0095
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 198 4e-51
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 198 4e-51
SB_56| Best HMM Match : Actin (HMM E-Value=0) 198 4e-51
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 197 5e-51
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 1e-50
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 1e-50
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 173 1e-43
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 51 6e-07
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 3e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_54| Best HMM Match : Actin (HMM E-Value=0) 41 9e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37815| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 27 8.6
SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30) 27 8.6
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 198 bits (482), Expect = 4e-51
Identities = 94/114 (82%), Positives = 102/114 (89%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQPSFLGM++ GIHE TYNSI+KCDVDIR+ ++ TTMYPGIADRMQKEI+ALA
Sbjct: 225 FQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALA 284
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
P TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 285 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 198 bits (482), Expect = 4e-51
Identities = 94/114 (82%), Positives = 102/114 (89%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQPSFLGM++ GIHE TYNSI+KCDVDIR+ ++ +TMYPGIADRMQKEIT+LA
Sbjct: 263 FQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLA 322
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
P TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 323 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 198 bits (482), Expect = 4e-51
Identities = 94/114 (82%), Positives = 102/114 (89%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQPSFLGM++ GIHE TYNSI+KCDVDIR+ ++ +TMYPGIADRMQKEIT+LA
Sbjct: 262 FQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLA 321
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
P TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 322 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 197 bits (481), Expect = 5e-51
Identities = 94/114 (82%), Positives = 102/114 (89%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQPSFLGM++ GIHE TYNSI+KCDVDIR+ ++ +TMYPGIADRMQKEI+ALA
Sbjct: 263 FQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALA 322
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
P TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 323 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 196 bits (478), Expect = 1e-50
Identities = 93/113 (82%), Positives = 102/113 (90%), Gaps = 1/113 (0%)
Frame = -1
Query: 591 QPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALAP 415
QPSFLGM++ GIHE TYNSI+KCDVDIR+ ++ TTMYPG+ADRMQKEI+ALAP
Sbjct: 237 QPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAP 296
Query: 414 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 297 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 196 bits (477), Expect = 1e-50
Identities = 93/114 (81%), Positives = 102/114 (89%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQPSFLGM++ GIHE TYNSI+KCDVDIR+ ++ +TM+PGIADRMQKEI+ALA
Sbjct: 262 FQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALA 321
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
P TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 322 PPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 173 bits (420), Expect = 1e-43
Identities = 81/114 (71%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALA 418
FQP+FLGM+A GIHE YN I+KCDVDIR+ ++ +TM+PGIADRMQKEI LA
Sbjct: 36 FQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLA 95
Query: 417 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 96 NASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = -1
Query: 576 GMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIADRMQKEITALAPSTMKI 400
G A G+ + S+ D+DIR IV T+ G +R+ +E+ + P +M++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 399 KIIA---PPERKYSVWIGGSILASL 334
K+I+ E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = -1
Query: 423 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 256
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 44.4 bits (100), Expect = 7e-05
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 30/134 (22%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIRRT*RQPGIVRW-TTMYPGIA----------- 451
FQP + ++ G+ E +N+I D+D R + ++ +TMYPG+
Sbjct: 266 FQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREIKQLY 325
Query: 450 -DRMQKEITALAPSTM----------------KIKIIAPPERKYSVWIGGSILAS-LSTF 325
+R+ K T+ S M KI+I PP RK+ V++GG++LA +
Sbjct: 326 LERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMKDK 385
Query: 324 QQMWISKQEYDESG 283
W++++EY+E G
Sbjct: 386 DSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -1
Query: 594 FQPSFLGMKACGIHEPTYNSIIKCDVDIR 508
FQPS LG GIHE + SI KCD+D+R
Sbjct: 2307 FQPSLLGRDIDGIHESIFKSIKKCDIDLR 2335
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Frame = -1
Query: 540 NSIIKCDVDIRRT*RQPGI-VRWTTMYPGIADRMQKEITALAPSTM--------KIKIIA 388
+S++ C +D R+T + + + T M PG R+ +EI L S +K+
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQ 123
Query: 387 PP-ERKYSVWIGGSILASLSTFQQMWISKQEYDE 289
PP + W+GG+I SL +++ Y +
Sbjct: 124 PPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 562 RHPRAHI*LHHKVRRGHPKN--LTPTRYCPVD-HHVPWNRRP 446
+HPR HI R HP++ PT+ P D H P RRP
Sbjct: 50 QHPREHISDTEPTHRAHPQSPPTEPTQRLPRDGHPAPSKRRP 91
>SB_37815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 410 VDGARAVISFCIRSAIPGYMVVHRTIPG 493
V G +++ C R AIPG V+ IPG
Sbjct: 48 VVGKPPLVTLCCRKAIPGNPVLSEAIPG 75
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 359 IHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMVVHRTIPGWRQVLRMSTSH 526
I ++ +L GG++ L+ D A + R G V + + GW + + +SH
Sbjct: 744 IQSDLYLGGGSIDLLIGTDFPEAFVDLETRQGQSGDPVAKQNLFGWYVIGPLDSSH 799
>SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)
Length = 291
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 481 DNTGLASSSSDVHVALYDGVICGLVDAASFHSQE 582
D+ LASS SD+ +YD VIC D+ S S+E
Sbjct: 185 DDAYLASSESDLPGLVYDRVICN-PDSTSSTSRE 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,398,234
Number of Sequences: 59808
Number of extensions: 431206
Number of successful extensions: 1077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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