Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0093
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.9  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   5.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 299 DTYTESYISTIGVDFKIRTVD 361
           D +T S IST G DF    VD
Sbjct: 299 DNHTLSVISTDGSDFNATEVD 319


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 462 SLYMIAQTRIHSAT*KVV 515
           +L+ +  T+IH+AT KV+
Sbjct: 9   ALFALTTTQIHAATDKVI 26


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 621 IAYCTKVDNLFSGQVTLVTDEQFVHI 544
           I YC    NL S   TLV ++   +I
Sbjct: 255 ILYCIIAKNLMSNAATLVLNKHIDNI 280


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 580 SHTCYRRAVCSHCHKRNDQSPLTTFHV 500
           +HT  +R  C  C+KR  +S     HV
Sbjct: 368 THTGEKRFACPICNKRFMRSDHLAKHV 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,419
Number of Sequences: 336
Number of extensions: 2941
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)