Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0093
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            88   3e-19
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    52   1e-08
Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    23   8.3  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 87.8 bits (208), Expect = 3e-19
 Identities = 40/85 (47%), Positives = 55/85 (64%)
 Frame = +2

Query: 257 SGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSS 436
           S VGKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   
Sbjct: 33  SAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPM 92

Query: 437 YYRGAHGIIIVYDCTDQDSFSNVKS 511
           YYRGA   I+VYD  + DSF+  K+
Sbjct: 93  YYRGAQAAIVVYDIQNSDSFARAKT 117



 Score = 35.5 bits (78), Expect = 0.001
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 511 WLEEIDRYACDNVNKLLVGNKCDLTTKKVVDF 606
           W++E+ R A  N+   L GNK DL   +VVD+
Sbjct: 118 WVKELQRQASPNIVIALAGNKADLANSRVVDY 149


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 52.4 bits (120), Expect = 1e-08
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = +2

Query: 263 VGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYY 442
           VGK+C+L+ +  D++   Y+ T   ++    V ++G  + L +WDTAGQE +  +    Y
Sbjct: 17  VGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQEDYDRLRPLSY 75

Query: 443 RGAHGIIIVYDCTDQDSFSNVKS 511
                 +I Y      SF NV S
Sbjct: 76  PQTDVFLICYSVASPSSFENVTS 98


>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 49  GFPRAAGIRRPRIH 90
           G  RAAG+RR R+H
Sbjct: 186 GSRRAAGVRRNRLH 199


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,686
Number of Sequences: 2352
Number of extensions: 11526
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)