Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0092
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    49   4e-07
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    37   0.002
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    29   0.50 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   3.5  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   8.1  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   8.1  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 23/69 (33%), Positives = 38/69 (55%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P+  ++I EV                  F+  +PWR   +++RG  +++LAD IE++  
Sbjct: 44  SPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSAQRGRCLSRLADCIEQNLE 103

Query: 436 YLASLETLD 462
           YLAS+ETLD
Sbjct: 104 YLASIETLD 112


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 361 WRTMDASERGALINKLADLIERDRTYLASLETLDTANHTRTRIFGDL 501
           W+ +  SE+G L+ KLA+L E+    LA++E +D+     +   GD+
Sbjct: 72  WKKVPGSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDV 118


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 297 GMLDLSYNLAIGRVSVLKVFPSEDFTHSLFMKRPVYK 187
           G ++ SYNL +G++        E+F+ +    +PV++
Sbjct: 90  GAIETSYNLPVGKIEEAMKLSDEEFSKTYGFSKPVFE 126



 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 348 FERISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVF 238
           FE+++   ++F  IC V  L LS+ L   R S L+V+
Sbjct: 31  FEKVNQHRNTFAFICDVFWLKLSFTL---RYSTLQVY 64


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 167 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFI 21
           +P    + L+ ++ +   +C R AT  +Y Y P +    +S+SYR   I
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 299 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 403
           T  M TKL  Q +M+  +D H   WTP      ST
Sbjct: 24  TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = +1

Query: 55  LSVYLGTYKYIKN 93
           LS+YLGTY+++K+
Sbjct: 233 LSIYLGTYEHVKS 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,312
Number of Sequences: 5004
Number of extensions: 45347
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)