Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0092
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 41 8e-04
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 40 0.001
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 39 0.003
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 37 0.010
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 37 0.014
05_05_0263 - 23673014-23673697,23673772-23674188 29 2.7
02_02_0500 - 10993675-10994067,10994434-10995738 28 4.8
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553... 28 6.3
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 27 8.3
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G+VIA++ F G PW M RG +++K ADL+E+
Sbjct: 40 DPRTGEVIAKIAEGDKADIDLAVKAAREAFDHG-PWPRMSGFARGRILHKFADLVEQHVE 98
Query: 436 YLASLETLD 462
LA+L+T+D
Sbjct: 99 ELAALDTVD 107
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G VIA V F G W M SERG ++ K A+++ER
Sbjct: 67 DPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGE-WPRMSGSERGRVMAKYAEVVERHAD 125
Query: 436 YLASLETLD 462
LA+LE+LD
Sbjct: 126 ELAALESLD 134
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 182 EILYTGLFINNEWVKSSDGKTFKT 253
EI YT LFIN +V ++ GKTF+T
Sbjct: 42 EIRYTKLFINGRFVDAASGKTFET 65
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G++IA V F G PW M A ER ++ + ADLIE+
Sbjct: 90 DPRTGELIAHVAEGDAEDINRAVHAARKAFDEG-PWPKMTAYERSRILLRFADLIEKHND 148
Query: 436 YLASLETLD 462
+A+LET D
Sbjct: 149 EIAALETWD 157
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G VIA V F G PW M A ER ++ + ADLIE+
Sbjct: 94 DPRTGDVIARVAEGDAEDVNRAVAAARRAFDEG-PWPRMTAYERCRVLLRFADLIEQHAD 152
Query: 436 YLASLETLD 462
+A+LET D
Sbjct: 153 EIAALETWD 161
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G V+A + F+ G W M ER ++NKLADL+E+
Sbjct: 48 DPRTGDVLAHIAEADKADVDLAVKAAREAFEHGK-WPRMSGYERSRVMNKLADLVEQHAD 106
Query: 436 YLASLETLD 462
LA+L+ D
Sbjct: 107 ELAALDGAD 115
Score = 34.7 bits (76), Expect = 0.055
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 182 EILYTGLFINNEWVKSSDGKTFKT 253
EI +T LFIN E+V ++ GKTFKT
Sbjct: 23 EIKFTKLFINGEFVDAASGKTFKT 46
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 349 LGSPWRTMDASERGALINKLADLIERDR 432
+ SPWR +DA G ++ +L L++R R
Sbjct: 1 MDSPWRDLDADVLGFILKRLPCLVDRRR 28
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 255 KPCQWPSYS*GPTCQQSRCGQSCEGS*KCVQTWITMENNGRLREGGP 395
K C P +S P RC +GS K + ++NNG + GP
Sbjct: 337 KSCDVPGFSGVPPTALVRCFHMGKGSNKVGSLQLFVDNNGSCEDMGP 383
>06_03_0253 +
18753901-18754278,18754873-18754968,18755167-18755376,
18756028-18756093,18756379-18756576,18756616-18756810,
18756968-18757014,18757147-18757234,18757331-18757681,
18758593-18759123
Length = 719
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 379 SERGALINKLADLIERDRTYLASLETLDTANHTRTRIFGDLLLHK 513
SE G LI + ++ +RD+ + LETL N R + L+ +K
Sbjct: 492 SEIGKLIGQDREMEQRDKERVVKLETLGNINFIRALLKKKLITNK 536
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 352 GSPWRTMDASERGALINKLADLIERDRTYLASLETLDT 465
G W + R + +A I+ ++YLA LETLD+
Sbjct: 65 GRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDS 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,875
Number of Sequences: 37544
Number of extensions: 319364
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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