Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0092
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               59   3e-09
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)                 39   0.003
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)                31   0.52 
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              29   2.8  
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   28   6.4  
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/70 (48%), Positives = 41/70 (58%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           NP  G+ I ++                  FKLGS WRTMDAS RG L+ KLA LI+RD  
Sbjct: 351 NPTTGEKICDISEGDKEDVDKAVKAAKEAFKLGSAWRTMDASMRGKLLYKLAQLIDRDIA 410

Query: 436 YLASLETLDT 465
           YLASLET+D+
Sbjct: 411 YLASLETIDS 420


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 343  FKLGSPWRTMDASERGALINKLADLIERDRTYLASLETLD 462
            FKLGS WRTMDAS RG  + KLADL ERD  YLA LE+ D
Sbjct: 1250 FKLGSVWRTMDASARGHFLYKLADLCERDADYLARLESYD 1289


>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
          Length = 266

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +1

Query: 238 EDLQN*NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADL 417
           + +Q  NPA  +VIA V                  F   SPW  +   ER  L+   ADL
Sbjct: 59  QTIQVLNPATAEVIARVPRAGQREIDRAVMAARQAFD-DSPWSRIKPVERQKLLWNFADL 117

Query: 418 IERDRTYLASLETLD 462
           IE++   LA +E++D
Sbjct: 118 IEKNAALLAEIESID 132


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = -1

Query: 399  DKGPPLGGVHCSPW*SKFERISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVFPSEDFT 220
            D  P +  V C  +      I  CLHSF   C V  L  SY+  +    V K  P  +  
Sbjct: 1359 DLNPHIICVLCGGYLVDATTIVECLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPFLNIR 1418

Query: 219  HSLFMKRPVYKI 184
                ++  VYK+
Sbjct: 1419 PDCVLQDIVYKL 1430


>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 510

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 339 ISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVFPSEDFTHSLFMKRPVYKI 184
           I  CLHSF   C V  L+ SY   +    + K  P  +      ++  VYK+
Sbjct: 29  IIECLHSFCRCCIVRYLETSYRCPVCDAEIHKTRPLLNIRADNVLQDIVYKV 80


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 339 ISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVFP 235
           I  CLHSF   C V  L+ SY   +    + K  P
Sbjct: 61  IIECLHSFCRCCIVRYLETSYRCPVCDAEIHKTRP 95


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 421 ERDRTYLASLETLDTANHTRTRIFG 495
           +RD T L  L  L TA+H R RI+G
Sbjct: 152 KRDTTRLRPLSELYTASHRRLRIYG 176


>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 76  YKYIKNVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFI---HRSLHK 210
           +KY K++ + +++    K   CN C     S +K  N +   HR  HK
Sbjct: 166 FKYAKSLKQHIEVHCDPKRVKCNYCCIDLPSTSKLANRVVKRHRGEHK 213


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 200 LFINNEWVKSSDGKTFKT 253
           LFIN E+V S  GKTF T
Sbjct: 711 LFINGEFVDSHHGKTFNT 728


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,854
Number of Sequences: 59808
Number of extensions: 365283
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)