Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0092
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   3.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.1  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   5.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 443 LAWRRLTPQTIQGLVFSGICCFIKNLPFFPRWG 541
           +AW   TP  +  + FSGI   +K  P F  WG
Sbjct: 289 MAW---TPYLV--INFSGIFNLVKISPLFTIWG 316


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 443 LAWRRLTPQTIQGLVFSGICCFIKNLPFFPRWG 541
           +AW   TP  +  + FSGI   +K  P F  WG
Sbjct: 39  MAW---TPYLV--INFSGIFNLVKISPLFTIWG 66


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 265 WQGFSFEGLPIRRLHPLIV 209
           + GF++EGL  R L P I+
Sbjct: 626 FDGFNWEGLRARTLEPPIM 644


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 221 VKSSDGKTFKTET 259
           V S +G TFKTET
Sbjct: 82  VTSIEGNTFKTET 94


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 221 VKSSDGKTFKTET 259
           V S +G TFKTET
Sbjct: 84  VTSIEGNTFKTET 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,207
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)