Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0092
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic...    44   7e-05
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (...    44   7e-05
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica...    42   4e-04
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin...    30   0.99 
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    30   1.3  
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    29   2.3  
At5g42490.1 68418.m05172 kinesin motor family protein contains P...    29   3.0  

>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
           to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
           gi|20530143|gb|AAM27004
          Length = 501

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 26/69 (37%), Positives = 32/69 (46%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P NG+VIA +                  F  G PW  M   ER  LINK ADLIE +  
Sbjct: 41  DPRNGEVIATIAEGDKEDVDLAVNAARYAFDHG-PWPRMTGFERAKLINKFADLIEENIE 99

Query: 436 YLASLETLD 462
            LA L+ +D
Sbjct: 100 ELAKLDAVD 108



 Score = 31.5 bits (68), Expect = 0.43
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 182 EILYTGLFINNEWVKSSDGKTFKT 253
           EI +T LFIN +++ ++ GKTF+T
Sbjct: 16  EIKFTKLFINGQFIDAASGKTFET 39


>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
           (ALDH3) nearly identical to mitochondrial aldehyde
           dehydrogenase ALDH3 [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein
          Length = 534

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 25/69 (36%), Positives = 34/69 (49%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P NG+VIA+V                  F  G PW  M A ER  ++ + ADLIE+   
Sbjct: 75  DPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEG-PWPKMTAYERSKILFRFADLIEKHND 133

Query: 436 YLASLETLD 462
            +A+LET D
Sbjct: 134 EIAALETWD 142


>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
           to aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:8574427; similar to mitochondrial aldehyde
           dehydrogenase [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; identical to cDNA aldehyde
           dehydrogenase AtALDH2a GI:20530140
          Length = 538

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 25/69 (36%), Positives = 32/69 (46%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P  G+VIA V                  F  G PW  M A ER  ++ + ADL+E+   
Sbjct: 79  DPRTGEVIAHVAEGDAEDINRAVKAARTAFDEG-PWPKMSAYERSRVLLRFADLVEKHSE 137

Query: 436 YLASLETLD 462
            LASLET D
Sbjct: 138 ELASLETWD 146


>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
           (CCCH type) family protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 70  GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIH 195
           G YK  K   E    G G+KS+ C   FS +G P  +  +F+H
Sbjct: 19  GGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLH 61


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 SPWRTMDASERGALINKLADLIERDRTYLASL 450
           +P R +D  ERG ++ KL +   RDR++L  L
Sbjct: 147 TPLRLLDDPERGTVVEKLREETLRDRSHLEEL 178


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 70  GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIH 195
           G +K  K   E +  G G+KS+ C   FS +G P     +F+H
Sbjct: 19  GGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61


>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1087

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 RTMDASERGALINKLADLIERDRTYLASLETL 459
           R +D  ERG ++ KL +   +DRT+L  L T+
Sbjct: 154 RLLDDPERGTVVEKLIEETIQDRTHLEELLTV 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,063
Number of Sequences: 28952
Number of extensions: 252629
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)