Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0090
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    29   0.53 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.70 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    28   0.92 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   3.7  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   3.7  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   3.7  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.9  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   6.5  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   8.6  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   8.6  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   8.6  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   8.6  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 513 PSSGRIILKYLTSLKTKHNARTSTRPGTGPHPLPVQTRHAPVLRANPYSEVTDP 352
           P S  +  ++ +S  TKH+A   T+    P   P+Q  H P    +P ++   P
Sbjct: 400 PFSPTLAPQHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGFPTSPAAKPNSP 453


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 473 LKRNITHEHRPDRAPGRIRFPSKPDTPRSSEPILIPKLRIQFAD 342
           LK ++T E + D  P R R    P  P SSE  L P   +  AD
Sbjct: 413 LKSDLTVEKKSDIYPSRARISISPMLPTSSEDNLHPLQPLTTAD 456


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 510 RGGPGTQFRPIVESYLQFTGRRFTNVRDW 596
           +  PGT    +V S++ FT  RF +  DW
Sbjct: 387 KNNPGTPSASLVASHIMFTLNRFMHSTDW 415


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 444  TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLP 337
            +RP T P P P + + APV + +    V  PI   P
Sbjct: 980  SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQP 1015


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 137 EFHGIL*KGDMVRNAKS--TAFAAVSGYSLRTLKIH 238
           E+HG+  +G +VRNA +  T F  + G S   L +H
Sbjct: 69  EYHGVQARGQLVRNADNSVTNFRDLLGKSHDELTLH 104


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 456 ARTSTRPGTGPHPLPVQTRHAPV 388
           A+ S  P   P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 194 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 57
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 446  RPDRAPGRIRFPSKPDTPRSSEPILIPKLRIQFAD 342
            RP+ AP R +F   P+   +  P  +P L +++ D
Sbjct: 1003 RPNTAPARQKFARPPNIETAPIPRPLPNLPMEYND 1037


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 400 TRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAAEYGYEP 266
           +RP PQ+Q       S  P+S +  I S+    P  P  EYG EP
Sbjct: 182 SRP-PQNQIQHDGVKSEDPSSESVNINSSSSLLPDSPVNEYGLEP 225


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  RVFDGVTQSGLKTPPRGPGRV 115
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 577 KRRPVNCKYDSTIGRNWVPGP--PLKRPHY 494
           K+R   C+YDS + R   P    P+ RP Y
Sbjct: 270 KKRNKECQYDSVLNRLTFPTEQYPIWRPEY 299


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  RVFDGVTQSGLKTPPRGPGRV 115
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 550 DSTIGRNWVPGPPLKRPHYI 491
           + T+ ++W  G P+ RP YI
Sbjct: 188 EKTVKKDWKRGDPIPRPTYI 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,517
Number of Sequences: 5004
Number of extensions: 58454
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)