Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0090
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 32 0.31
06_01_0350 + 2534422-2535615 31 0.94
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 30 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.6
02_05_0207 + 26778403-26778927 29 2.2
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 2.2
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 29 2.9
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 2.9
10_08_0642 - 19525774-19526554,19526657-19527075 29 3.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 3.8
03_01_0545 - 4086692-4087591 29 3.8
01_06_0091 - 26363070-26363361,26363467-26363625,26363708-263638... 29 3.8
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 28 5.0
05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320 28 5.0
11_01_0237 + 1822218-1822252,1823164-1824145,1824261-1824893 28 6.6
03_05_0604 + 26056528-26056776 28 6.6
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 28 6.6
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 28 6.6
07_03_0630 - 20097672-20097772,20097983-20102012 27 8.7
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331 27 8.7
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296... 27 8.7
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 444 TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLPL 334
T+P + H L + RH P L+A P S + C+LPL
Sbjct: 100 TKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 147 PWNSNAQAEKKTLPGPLGGVFRP 79
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Frame = -2
Query: 559 CKYDSTIGRNWVPGPPLKRPHYIKILNLA*NET*RTNIDQTGHRAASASRPNPTRPGPQS 380
CK D++ G + P P +++L+ T ++ T + S P P R P S
Sbjct: 258 CKRDASAGTSKPPASE-STPLLSSVIHLSAESTALSSFRST----VAVSPPRPIRRHPSS 312
Query: 379 QSLFRSYG-SNLPTSLTYIILSTRGSSPWRPAAEYGYEPARHLTYIPHVNFQGPQRVSGH 203
QS R+Y S+ P + Y + +SP+ + + A + H P + S H
Sbjct: 313 QSTSRAYSISSAPRN--YNLQRYYTNSPYISTSRSNVDLANMSSQWSHT----PHQASMH 366
Query: 202 RRKCGALRVPNHI 164
+ G L +P +I
Sbjct: 367 SLRSGHLSLPINI 379
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 4 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 168
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>02_05_0207 + 26778403-26778927
Length = 174
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 290 CCGIWVRTGATSHVHPSREFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT 132
CCG+ R + S +R R + PP RC SR +L S TR+
Sbjct: 56 CCGL--RLPSASRYATARTSHRPQRPLNLPPSHRCHSRGRLHLQSNPAANTRS 106
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = -1
Query: 245 PSREFSRSAESIRTPPQM-----RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSG 81
P R S+ S +P ++ S + + GFHG L+ KL PDL +
Sbjct: 170 PKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLME 228
Query: 80 HFGLPRRTLVFKDEGTI 30
HF LVF G I
Sbjct: 229 HFNPATNQLVFPGRGAI 245
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 272 RTGATSHVHPSREFSRSAESIRTPPQMRCSSRSEP 168
R+ + SH P +E SRSA R+P + R SRS P
Sbjct: 230 RSASRSH-SPVKERSRSASQSRSPVKERSPSRSPP 263
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 423 HPLPVQTRHAPVLRANP 373
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>10_08_0642 - 19525774-19526554,19526657-19527075
Length = 399
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 301 PWRPAAEYGYEPARHLTYIPHVNFQGPQRVSGHRRKCGALR 179
PWR + G HL + HV+ +G +G R CG R
Sbjct: 58 PWRRMSPVGAYSVWHLDGVGHVDLRGASPPAGVPRCCGMPR 98
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 417 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 304
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>03_01_0545 - 4086692-4087591
Length = 299
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -1
Query: 551 RLHYRAKLGTGAPPQAAALY*NT*PRLKRNITHEHRPDRAPGRIRFPSKPDTPRSS 384
R R + GAPP AAA R +R + H H AP + PS P TP ++
Sbjct: 149 RCGVRGSMPVGAPPTAAAPSRGN-RRGRRRVRHAHAAATAPLMMTSPS-PRTPAAA 202
>01_06_0091 -
26363070-26363361,26363467-26363625,26363708-26363880,
26366639-26366810,26366912-26367294
Length = 392
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1
Query: 337 GKSANWIRNFGIR--IGSEDRGVSGLDGKRMRPG---ARSGRCSCVMFR 468
G A+ + G+R GS R +G G R G ARSG SC MF+
Sbjct: 30 GAVASVVETLGVRRHFGSPKRNTTGQHGAGRRRGGGSARSGLASCNMFQ 78
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 338 GSRQIGSVTSE*GLALRTGACR-VWTGSGCGPVPGLVDVRALCFVLSEVK 484
GSR++ + S R ACR V+ G+G P PG VD+ LC +L ++K
Sbjct: 48 GSRRVQAEASPLQRLFR--ACRAVFRGTGTVPAPGEVDL--LCSMLDKMK 93
>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
Length = 251
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 413 GSGCGPVPGLVDVRALCFVLSEVKYFNIMRPLEGGPRY 526
GSG GP+ GLV L F L V Y I+ P P +
Sbjct: 136 GSGIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPGF 173
>11_01_0237 + 1822218-1822252,1823164-1824145,1824261-1824893
Length = 549
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 443 VDVRALCFVLSEVKYFN--IMRPLEGGPRYPISPYSGVVFTIHWPSFYKR 586
V + A CF + N I+R EG R I Y G + WPS +R
Sbjct: 280 VFMAACCFKWVAFTFANMAILRAAEGRNRLHIVDYGGQYHGLQWPSLLQR 329
>03_05_0604 + 26056528-26056776
Length = 82
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/18 (66%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Frame = +1
Query: 400 SGLDGKRMRPGAR-SGRC 450
+G DG++MRPGAR +GRC
Sbjct: 47 AGGDGQQMRPGARATGRC 64
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 308 LFTLETCCGIWVRTGATSHVHPSREFSRSAESIRTPPQMRCSSRSE 171
L T + CG W T + + E+SR I P + SSR++
Sbjct: 183 LVTPDEACGTWFSTLKPTPLRSEMEWSRQIRPIVVDPGLYLSSRTD 228
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2
Query: 421 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPA 287
SAS P+P +P P S SL R+ S +Y G W A
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAA 58
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = -1
Query: 278 WVRTGATSHVHPSREFSRSAESIRTPPQMRCS-SRSEPYLPSIGFHGTRTLRQKRKLFPD 102
W + HP E S E IR P + R+ +P +G G + +F D
Sbjct: 223 WTQQAIEVSPHPENEKSNKVEYIRHPHDSAVTYLRNPAVIPIVGISGVGKSALAKFIFDD 282
Query: 101 LSAASSGHFG 72
+ HFG
Sbjct: 283 ANVRE--HFG 290
>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
Length = 384
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 522 RGPPSSGRIILKYLTSLKTKHNARTSTRPGTGPHPLPVQTRHA 394
R SS + +L S ART+ RP P+ + T HA
Sbjct: 37 RASTSSATSLTPFLASSSRSSRARTAVRPEPSPNGGALSTHHA 79
>04_01_0234 +
2963364-2963520,2963931-2964053,2964134-2964205,
2964709-2964979,2965301-2965380,2966075-2967292,
2968137-2968315
Length = 699
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -3
Query: 270 NRRDISRTSLT*IFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGG 91
N R SRT+LT FK+ + P+ A +L ++ YR N ++KT G +G
Sbjct: 441 NNRSSSRTTLTEYFKMNQVDPE--ARKLL--YKEFPKHYRWITGQNVWQKRKTKRGQVGR 496
Query: 90 V 88
V
Sbjct: 497 V 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,139
Number of Sequences: 37544
Number of extensions: 456966
Number of successful extensions: 1612
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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