Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0090
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    31   0.48 
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    30   1.5  
Z67880-2|CAA91792.2|  505|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 513 GGPGTQFRPIVESYLQFTGRRFTNVRDWGK 602
           GGPG QFRP+ +    F  R F   R  GK
Sbjct: 386 GGPGRQFRPLYDIPFMFQAREFLRKRLLGK 415


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 406 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAAEYGYEPARHLTYI 245
           +P +  P +Q LF S+G  LP      I +   SSP +  A++  +   H+ Y+
Sbjct: 19  SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSPSK-IAQFLKDSYPHMKYL 71


>Z67880-2|CAA91792.2|  505|Caenorhabditis elegans Hypothetical
           protein C34E7.1 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 292 PAAEYGYEPARHLTYIPHVNFQGPQRVSGHRRKCGALRVPNH 167
           PA  Y ++P     Y  + N  G  +VSGH+   G  ++ +H
Sbjct: 258 PAPNYHFQPPPSYGYQQNNNMMGNPQVSGHQMAGGQQQLQHH 299


>Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical
           protein F46B6.3b protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 513 PSSGRIILKYLTSLKTKHNARTSTRPGTGPHPLPVQTR 400
           P S  +  K+  S+ TK N  T TRP T P    + TR
Sbjct: 315 PKSAPMKKKHDLSVTTKLNKETDTRPRTAPSSTKLPTR 352


>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical protein
            T12G3.2b protein.
          Length = 912

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = -2

Query: 427  AASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAAEYGYEPARHLTY 248
            A  A    PT   P    L RS   +LP S T + +S    SP +P ++    P+ + T 
Sbjct: 836  APIARNMGPTMISPPPAKLVRSDSDHLPPSNTMMRVS---CSPPKPPSQL---PSPNQTT 889

Query: 247  IPHVNFQGPQRVSGHRRK 194
            IPH+   G   +  H ++
Sbjct: 890  IPHMYNNGIPMIYEHHQQ 907


>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
           protein R134.1 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -3

Query: 327 LFYRLEALHLGDLLRNMGTNRRDISRTSLT*IFKVRREYPD-TAANAVLFAFRTISPFYR 151
           L+Y+ E  H G ++ ++ T   D S  S+  + K   +  D    NAV+ + +T +    
Sbjct: 179 LYYKSEVNHCGGVMNDVETTFNDPSTYSIQIVLKAEIDASDNVTTNAVISSVKTRARI-- 236

Query: 150 IPWNSNAQAEKK 115
           I W +   +EK+
Sbjct: 237 ILWCAQLGSEKR 248


>Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical
           protein F28D9.2b protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 449 VRALCFVLSEVKYFNIMRPLEGGPRYPISPYSGVVFTIHWPS 574
           V A+C + SE+ +   +R LE   RY +       +T +WP+
Sbjct: 108 VTAICLLKSELSHVQQVRILEKVRRYKLQTRETANYTQNWPN 149


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 228 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 100
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 431 PGRIRFPSKPDTPRSSEPILIPKLRI 354
           P  ++  SKP TP  + P+L+P++ +
Sbjct: 326 PAMVQKSSKPSTPIPAPPVLVPQVEL 351


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 212 IRTPPQMRCSSRSEPYLPSIGFHGT 138
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 568  PVNCKYDSTIGRNWVPGPPLKRPHYIKI 485
            P   KY + +GR W P P  K P  I++
Sbjct: 3421 PSQRKYYTRLGREWKPPPKAKTPLSIRV 3448


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 188 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 15
           C++   P+L  I    T+ +RQ   + P+L +A   H       + FK E     T+P
Sbjct: 80  CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,781
Number of Sequences: 27780
Number of extensions: 347838
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)