Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0090
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07220.1 68414.m00768 expressed protein 33 0.11
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.2
At5g42370.1 68418.m05159 expressed protein 29 3.2
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 3.2
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 28 4.2
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 4.2
At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putat... 28 5.5
At5g22390.1 68418.m02612 expressed protein 27 7.3
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 27 7.3
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 27 9.6
At2g05210.1 68415.m00549 expressed protein 27 9.6
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 9.6
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 9.6
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -1
Query: 425 RIRFPSKPDTPRSSEPILIPKLRIQFADFP-YLHYSID*RLFTLETCCGIWVRTGATSHV 249
R+R P K +PRS +L+ L + F F L Y +D + +T G + H+
Sbjct: 6 RLRLPHK-SSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEP-TPWHI 63
Query: 248 HPSREFSRSAESIRTPPQMRCSSRSEPY 165
P + FS + + + ++CS S PY
Sbjct: 64 FPRKSFSAATKHSQAYRILQCSYFSCPY 91
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 223 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 89
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 162 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 52
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 25 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 156
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = -2
Query: 427 AASASRPNPTRPGPQS------QSLFRSYGSNLPTSLTYIILS-TRGSSPWRPAAEYG 275
AA+A+ PNPT P P S QS +S+ + S T S +R +SP AA YG
Sbjct: 47 AAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYG 104
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 218 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 120
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putative
/ glycerol 3-phosphate permease, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 493
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = -1
Query: 311 RLFTLETCCGIWVRTGATSHVHPSREFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT 132
+ FT + + A + H SR+ +S+ PP + SS + P G GT+
Sbjct: 23 KTFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGPPSLNSSSIDNGWAPFNGTQGTKR 82
Query: 131 LRQKRKLFPD---LSAASSGHFG 72
L + F L +GH G
Sbjct: 83 LGELDLAFLSSYALGMYFAGHLG 105
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 97 ERSGKSFLFCLSVRVPWNPIEG 162
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 470 KRNITHEHR-PDRAPGRIRFPSKPDTPRSSEPILIPKLRIQF 348
K+++ H P R P RFP+K + PR + + +P QF
Sbjct: 400 KQDVRRAHSLPQRDPRASRFPAKQNVPR-DDSVRLPSSSSQF 440
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +1
Query: 331 R*GKSANWIRNFGIRIGSEDRGVSGLDGKRMRPGARSGRCS 453
R G+ ++ R FG R G DRG G G R G R GR S
Sbjct: 12 RGGERGDFGRGFGGRGGRGDRGGRGRGG---RGGRRGGRAS 49
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 218 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 63
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 145 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 26
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 145 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 26
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,666
Number of Sequences: 28952
Number of extensions: 332564
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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