Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0089
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   4.9  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   4.9  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 363 IGFMSIASLRDENKFYC-NYNYFYGLK 286
           +G+  ++ LRD+N FY  N N F+  K
Sbjct: 260 LGYQLLSDLRDDNYFYLFNDNSFFTAK 286


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 345 ASLRDENKFYCNYNYFYGLKLRFFIK 268
           A + DE +  C++ Y   +KLR F++
Sbjct: 159 AEMTDEERNSCSHRYLAAMKLRDFLE 184


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 366 ADGSQHSLRAIEKCRIYRR 422
           ADG +    AI+K RIYRR
Sbjct: 334 ADGPEKGYDAIKKHRIYRR 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,229
Number of Sequences: 5004
Number of extensions: 25988
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)