Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0089
         (426 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021261-1|AAX33409.1|  429|Drosophila melanogaster RE52861p pro...    31   0.64 
AB232987-1|BAE94193.1|  429|Drosophila melanogaster Rieske-domai...    31   0.64 

>BT021261-1|AAX33409.1|  429|Drosophila melanogaster RE52861p
           protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 10  CRWVLHATFLQHYRRAI*SLEFGKNIMTKKLILQLFKWSKLN*LKTSNC*C*YQIKR-TL 186
           C W L  TF++ Y      LE+ K++  +       KWS L   KT N  C Y  KR T+
Sbjct: 26  CLWTLAVTFIRIYWIFFVPLEWKKDLDNE-------KWSFLR--KTENVVC-YNHKRDTI 75

Query: 187 NYKDKCRVLSVISLKP 234
           N   K ++  +I L P
Sbjct: 76  NRLRKLKIQKIIELPP 91


>AB232987-1|BAE94193.1|  429|Drosophila melanogaster Rieske-domain
           protein Neverland protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 10  CRWVLHATFLQHYRRAI*SLEFGKNIMTKKLILQLFKWSKLN*LKTSNC*C*YQIKR-TL 186
           C W L  TF++ Y      LE+ K++  +       KWS L   KT N  C Y  KR T+
Sbjct: 26  CLWTLAVTFIRIYWIFFVPLEWKKDLDNE-------KWSFLR--KTENVVC-YNHKRDTI 75

Query: 187 NYKDKCRVLSVISLKP 234
           N   K ++  +I L P
Sbjct: 76  NRLRKLKIQKIIELPP 91


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,400
Number of Sequences: 53049
Number of extensions: 242718
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)