Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0089
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040652-8|AAK84566.1|  402|Caenorhabditis elegans Hypothetical ...    28   2.4  
AF039711-5|AAB96708.1|  430|Caenorhabditis elegans Hypothetical ...    27   5.6  
U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical ...    26   9.8  

>AF040652-8|AAK84566.1|  402|Caenorhabditis elegans Hypothetical
           protein T05A8.7 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 399 LLHAMNVAIRRLIGFMSIASLRDENKFYCNYNYFYGLKL 283
           +L  M V +   +   ++  + +EN FYC  ++FY  K+
Sbjct: 32  ILLVMGVILNMTVINQAVMLMDNENAFYCPVHFFYAAKV 70


>AF039711-5|AAB96708.1|  430|Caenorhabditis elegans Hypothetical
           protein F49D11.2 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 57  YLKFRIWKKYHDKKINSSAI*ME 125
           YLK +IW+K+  +KIN +   +E
Sbjct: 123 YLKSKIWRKFLSRKINGATYLVE 145


>U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical
           protein C01G5.9 protein.
          Length = 426

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 258 IMTI**KNAILNRKSNCNYNKICSRHVNSQWT 353
           IM I  K+ +L+   NCN +KI       QWT
Sbjct: 278 IMMIDEKSTLLDYIRNCNDHKISELRFRCQWT 309


>AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.15 protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 408 YIFLLHAMNVAIRRLIGFMSIASLRDENKF 319
           Y+F+     V++RRL+G+  +AS  + N F
Sbjct: 350 YMFMSRKFRVSMRRLLGWRFLASDEEFNAF 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,640,570
Number of Sequences: 27780
Number of extensions: 140738
Number of successful extensions: 243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)