Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0089
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12850.1 68416.m01602 COP9 signalosome complex-related / CSN ...    27   5.3  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    27   7.0  

>At3g12850.1 68416.m01602 COP9 signalosome complex-related / CSN
           complex-related low similarity to SP|P45432 COP9
           signalosome complex subunit 1 (CSN complex subunit 1)
           (COP11 protein) (FUSCA protein FUS6) {Arabidopsis
           thaliana}
          Length = 367

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -1

Query: 426 QSVDIFYIFLLHAMNVAIRRLIGFMSIASLRDENKFYCNYNYFYGLKLRFFIKLSLLLE 250
           Q++D +   LL A+     R  G +   S+  E   YCN    YG K+  F  LS LLE
Sbjct: 147 QTIDAYMATLLVALET---RNFGELPHRSV--EQIAYCNVKRAYGFKIDCFKSLSNLLE 200


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
            family protein low similarity to RNA polymerase IIA
            largest subunit [Trypanosoma brucei] GI:162215; contains
            InterPro accession IPR000722: RNA polymerase, alpha
            subunit
          Length = 1453

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 19   VLHATFLQHYRRAI*SLEFGKNIMTKKLILQLFKWSKLN*LKTS--NC*C*YQIKRTLNY 192
            +LH+ FL+  +     +  GK I    L+  +F W  +  L  S       Y+I   LN 
Sbjct: 1308 LLHSAFLKDIK-----VLDGKGI-PMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNE 1361

Query: 193  KDKCRVLSVISLKPNSL 243
            +D+  V  V+ L PNS+
Sbjct: 1362 RDEGLVKMVLQLHPNSV 1378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,785,648
Number of Sequences: 28952
Number of extensions: 120747
Number of successful extensions: 212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)