Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0088
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.15 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.8  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   7.6  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 242  RIFKKSPEGNGDMPIETVKVVGLRKVP-GQPLGLTVTTDEHGQLIV 376
            RI  ++  G+ + P ETV ++   +VP G P  + V T++   L+V
Sbjct: 970  RIVAENEIGSSE-PSETVTIITAEEVPGGPPTSIRVETNDQHSLVV 1014


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 413 ALVSVGDVLLEVDGVHIESKEQPEGSCCKTQ*RVTLKVGL 532
           +L+   + L E++  +I+      G+ CK Q   TLK+G+
Sbjct: 532 SLLGAANQLEELNLKNIDLTVLESGAFCKMQPLRTLKIGV 571


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 253 FENSIRSGNSFGINLSSIPDP 191
           F N + +  +FGI ++S+ +P
Sbjct: 134 FSNDVIATAAFGIRVNSVQEP 154


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 325 SWYFSKTYNFYCFYRHIAVTLGTLF 251
           ++YF     F  FY H A TL T++
Sbjct: 296 NFYFIIFQVFESFYLHKATTLETVY 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,613
Number of Sequences: 336
Number of extensions: 4076
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)