Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0088
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    29   0.67 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.89 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    28   1.6  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    27   2.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   3.6  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   4.7  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   4.7  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   6.3  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = +3

Query: 474 SNLKEAVAKPNEGSLLKLAY----LKEKS---SQLTNKLTCFVRTLVDFYPIQRHL 620
           S+L      P+ G LL+++     LKEK+   + LTN L+ F+ T  DF+   +HL
Sbjct: 429 SSLNNLCVAPSAGCLLEISLMNDTLKEKTDIFTMLTNSLSSFLVTDYDFFLELKHL 484


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 608 SKTPLIPVPKKNRDLTISKERGGPFFSKNFFDLEKGAP 721
           SK+P + VP KNR  T S  R     SK F  ++   P
Sbjct: 219 SKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHSTP 256


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 702 SKKFLEKNGPPLSLEMVKSLFFFGTGIKGVFELGKSRPVFLQSKLTY 562
           SK  LEK+  P   ++ K+  FF +G+  + E  + + +   + L Y
Sbjct: 731 SKAILEKHADPTKYQIGKTKIFFRSGVTPLLESARDKALKHAAHLLY 777


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 474 SNLKEAVAKPNEGSLLKLAYLKEKSSQLTNKLTCFVRTLVD 596
           S+L EAVAKP   SL ++  L  +  Q  +    F+  L D
Sbjct: 310 SSLMEAVAKPESESLREICNLSLEQVQSASGAELFLHALYD 350


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 459 TLNQRSNLKEAVAKPNEGSLLKLAYLKEKSSQLTNKLT 572
           +LN+R NL        +G+  K     E+SSQL ++ T
Sbjct: 68  SLNERPNLLNKFMSAQDGTPSKSTGFNERSSQLVSEFT 105


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 456 FTLNQRSNLKEAVAKPNEGSLLKLAYLKEKSSQLTNKL 569
           F   +RS+L+   +KP + SLL    L +K S   N+L
Sbjct: 42  FNNQERSDLEHIHSKPKKDSLLSWNILLKKGSYKENEL 79


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 474 SNLKEAVAKPNEGSLLKLAYLKEKSSQLTNKLTCFVRTLVDF 599
           S + E +++  + +  KL   KE+ +QLT K+   + +L DF
Sbjct: 113 SEINERLSEAVQSAYTKLNEEKERCTQLTLKMNSQIASLSDF 154


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 331 RLSWYF-SKTYNFYCFYRHIAVTLGTL 254
           R  WY  S + NF+ FY H+   +G +
Sbjct: 255 RFLWYSTSYSLNFHLFYHHLTTMMGQM 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,126
Number of Sequences: 5004
Number of extensions: 66905
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)