Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0088
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 30 2.1
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 29 2.8
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859... 29 2.8
04_04_0704 + 27401683-27401818,27402761-27402937,27402983-274030... 29 2.8
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 29 3.7
03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514... 29 4.9
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 28 8.6
09_03_0210 - 13509814-13510965 28 8.6
01_07_0229 + 42161770-42164562 28 8.6
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 406 CCCTSCKYPCNNKLSMLIGCHSQT*RLSWYFSKTYNFYCFYRHIAVTLGT 257
C C +C+ L+ L+ H ++ T+++ CF+R I T+ T
Sbjct: 324 CSCFTCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHYLCFFRLIRDTIKT 373
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 392 GSAAAKQALV-SVGDVLLEVDGVHIESKEQPEGSCCKTQ 505
G+A A+QA+ + G+V EV+G I KEQ +C Q
Sbjct: 83 GTADAEQAVAPAAGEVKAEVNGGSIPDKEQDAAACTPIQ 121
>06_03_0468 -
21083754-21083869,21083986-21084069,21085633-21085920,
21087525-21087687
Length = 216
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 363 PCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLFLKILSGQ 232
P S V V+PK CPG R + F ++PL F++ ++ +
Sbjct: 68 PTSGVFEVEPKCCPGFMYRCSIFIGRTSLNPLEFRDFIQRMASE 111
>04_04_0704 +
27401683-27401818,27402761-27402937,27402983-27403048,
27403139-27403219,27404089-27404207
Length = 192
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 363 PCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLFLKILSGQ 232
P S V V+PK CPG R + + G+S F++ L+G+
Sbjct: 59 PTSGVFEVEPKNCPGFVYRRSVRMGTTGMSRAEFRSFIEKLTGK 102
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 474 SNLKEAVAKPNEGSLLKLAYLKEKSSQLTNKLTCFVRTLVDFY 602
SN + N GSL KL YL + NKL V LV+ Y
Sbjct: 645 SNCSLEILPANIGSLQKLCYLDLSRNSNLNKLPSSVTDLVELY 687
>03_02_0032 +
5143223-5143238,5143477-5143526,5144077-5144173,
5145272-5145559,5146161-5146402
Length = 230
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 363 PCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLFLKILS 238
P S V V+P+ CPG R + F + + P+ F+++ S
Sbjct: 68 PSSGVFEVEPRQCPGFRFRKSIFLGTTCLDPIQVRQFMELQS 109
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 39 GNVNIIRSLSEYRGNNIRTIEQAELAIIVSRAHFKALIEAHDQIGKIWLERG-SGI 203
GN ++ S+ G N I + ++S H K L AH ++ KIW+ G SGI
Sbjct: 80 GNTEVVAIQSKENGRNSNNILEDGEKSVLSSDHSKKL-SAHHRL-KIWITSGHSGI 133
>09_03_0210 - 13509814-13510965
Length = 383
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 716 PLFPNQKNFWKKMVPPFLWKWLNP-YFSLARVLKVSLNW 603
P F W+ VPPF W+ P S ARV +L +
Sbjct: 27 PSFALSCRHWRSAVPPFYPAWITPLLLSTARVGAANLRY 65
>01_07_0229 + 42161770-42164562
Length = 930
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 701 QKNFWKKMVPPFLWKWLNPYFSLARVLKVSLNWVKVDQ 588
Q+NFW ++PP L+K L+ V + L+W+ + +
Sbjct: 512 QQNFWLNVIPPSLFK------CLSSVTYLDLSWIPIKE 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,199,713
Number of Sequences: 37544
Number of extensions: 427087
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -