Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0088
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33) 52 5e-07
SB_17677| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 38 0.006
SB_3441| Best HMM Match : PDZ (HMM E-Value=0.0055) 36 0.033
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 35 0.077
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.077
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15) 34 0.10
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 32 0.54
SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 29 3.8
SB_43933| Best HMM Match : Allexi_40kDa (HMM E-Value=7.1) 29 5.0
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 29 5.0
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 6.7
SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3) 28 6.7
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0) 28 8.8
SB_33963| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 269 NGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEV 448
NG E +++VGL K + LG+T+ +++ QLI++RI+ G +Q L+ VGD++ EV
Sbjct: 132 NGFAAGEPIRMVGLHKHANEHLGVTLKVEDN-QLIISRIIHGGMIDRQGLLHVGDIIKEV 190
Query: 449 DGVHIE-SKEQPEGSCCKTQ*RVTLKV 526
+G + + + + K+ ++TLKV
Sbjct: 191 NGKDMSGNPSELQDYLAKSTGKITLKV 217
>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
Length = 718
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +2
Query: 269 NGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEV 448
+ M ++VK+V + K PLG TV +E G +++ RI+ G AA K L+ GD +LE+
Sbjct: 437 SSQMEDDSVKIVRIDK-SCDPLGATVK-NEDGAVLIGRIVKGGAAEKSGLLHEGDEILEI 494
Query: 449 DGVHIESKEQPE 484
+GVH++ K E
Sbjct: 495 NGVHMKGKSVSE 506
>SB_17677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 293 VKVVGLRKVPGQPLGLTVTTDEH-GQLIVARILAGSAAAKQALVSVGDVLLEVDGVHIES 469
VK V L K +PLG TV DE G ++VARIL G + + VGDV+ E++ +
Sbjct: 186 VKYVRLIKSGKEPLGATVKCDEDTGDIVVARILRGGMVDRSGTLGVGDVIQEINNQSVIG 245
Query: 470 KEQPE 484
K E
Sbjct: 246 KTTNE 250
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 281 PIETVKVVGLRKVPGQPLGLTVTTDEHGQ-----LIVARILAGSAAAKQALVSVGDVLLE 445
P ++V+ LRK PG+ LG T+ E+ Q + V + GS A K + GD +L
Sbjct: 962 PERDIQVIKLRKEPGKGLGFTILGGENSQRLDLGIFVKSVTEGSVAFKDGRLKAGDRILA 1021
Query: 446 VDGVHIE 466
V+G +E
Sbjct: 1022 VNGTSLE 1028
Score = 31.9 bits (69), Expect = 0.54
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +2
Query: 299 VVGLRKVPGQPLGLTV-----TTDEHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHI 463
VV L K+ G LGL+V TT + G + V ++ A + + +GD +LEV+GV +
Sbjct: 1254 VVELEKI-GSSLGLSVSGGVNTTVKLGGIYVKSLMLNGPADRNGKIRIGDRILEVNGVSL 1312
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Frame = +2
Query: 275 DMP-IET---VKVVGLRKVPGQPLGLTVTTDEHGQ---LIVARILAGSAAAKQALVSVGD 433
D+P +ET ++VV LR+ P LG+++ ++ GQ + V +L S+ A+ + GD
Sbjct: 1282 DVPFVETESGLRVVELRREPEVGLGISIAGNKRGQRQGVHVRHVLENSSVARLGELKAGD 1341
Query: 434 VLLEVDGVHIESKEQPE 484
+LEVDG + + E
Sbjct: 1342 QILEVDGHDLRNASHEE 1358
>SB_3441| Best HMM Match : PDZ (HMM E-Value=0.0055)
Length = 160
Score = 35.9 bits (79), Expect = 0.033
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 293 VKVVGLRKVPGQPLGLTVTTDEHGQLIVARILAGSAAAKQ 412
V++V K P +P+G+T+ ++ G+ +VARI+ G +Q
Sbjct: 45 VRLVQFHKNPNEPMGITLKLNDEGRCVVARIMYGGMIHRQ 84
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 34.7 bits (76), Expect = 0.077
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +2
Query: 239 DRIFKKSPEGNGDMPI-ETVKVVGLRKVPGQPLGLTVTT-DEHGQ---LIVARILAGSAA 403
+R F + + + D+ + + V +++ QPLG + D G+ + V+RI GS
Sbjct: 92 ERSFLRENDSSSDISFTQGTRAVEIKRTHNQPLGFFIRQGDGWGRKDGVFVSRITPGSLV 151
Query: 404 AKQALVSVGDVLLEVDGV 457
++VGD +LEV+GV
Sbjct: 152 DCDGSLAVGDEILEVNGV 169
>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 34.7 bits (76), Expect = 0.077
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 302 VGLRKVPGQPLGLTVTTDEHGQLIVARILAGSA----AAKQALVSVGDVLLEVDGVHIES 469
V + K PG+ LG+ + G +I I+A A AAK V+VGD +L V+ +
Sbjct: 237 VVVNKKPGEALGVMIVESGWGSMIPTAIIAHLAKDGPAAKSGRVNVGDQILSVNNTSLVG 296
Query: 470 KEQPE 484
PE
Sbjct: 297 LPLPE 301
>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
Length = 556
Score = 34.3 bits (75), Expect = 0.10
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 KSPEGNGDMPIETVKVVGLRKV-PGQPLGLTVTTD-EHG-QLIVARILAGSAAAKQALVS 424
K + NGD + KVV L K P Q LG ++ EHG + ++++ + S A KQ L
Sbjct: 116 KGLQENGDESM--FKVVTLVKTDPDQVLGFSIRGGREHGCGVYISQVDSDSQAEKQGL-H 172
Query: 425 VGDVLLEVDGVHIESKEQ 478
+GD ++EV+G+ E Q
Sbjct: 173 LGDQIIEVNGIDFEQIAQ 190
>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 317 VPGQP-LGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHI 463
V QP LGLT+T + G V RI GS A K + +GD + ++G ++
Sbjct: 277 VKDQPALGLTITDNGAGCAFVKRIKEGSIADKTPQICIGDHVEYINGQYV 326
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 332 LGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHIESKEQPE 484
LG+ ++ G+++V + + K V VGD LL ++ + +++K E
Sbjct: 507 LGIKAGLNDSGRVVVTEVSSFGLVGKDGNVRVGDYLLSINDIKLDNKSAEE 557
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 31.9 bits (69), Expect = 0.54
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 263 EGNGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQL---IVARILAGSAAAKQALVSVGD 433
+GNGD + T++++ K LGL + L V+ IL S A+K V +GD
Sbjct: 112 KGNGDEGVLTLEMI---KPSNGYLGLVLVGGADSPLKNHYVSDILPNSCASKCDCVRIGD 168
Query: 434 VLLEVDG 454
LLEV+G
Sbjct: 169 ELLEVNG 175
>SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 39 GNVNIIRSLSEYRGNNIRTIEQAELAIIVSRAHFKALIEAHDQIGKIW--LERGSGIDDK 212
G + + L +Y +R IEQ + S++ F ALI A D + K+W E K
Sbjct: 573 GKQQLSKLLPQYYTILLRQIEQDPM----SKSSFDALITATDDLSKMWHSSEIVKQEITK 628
Query: 213 LIPNEFPDLIEFSKRV 260
LIP ++++ ++RV
Sbjct: 629 LIPKHNENILKITERV 644
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 353 DEHGQLI-VARILAGSAAAKQALVSVGDVLLEVDGVHIESKEQPE 484
D+ G+L+ + I+ AAAK + GD L++V+G + +K E
Sbjct: 462 DQSGELLQIKSIVPDGAAAKDGKLRTGDALIKVNGRSVVNKTHQE 506
>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 284 IETVKVVGLRKVPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHI 463
++ V G + +P Q L D H R +G A+ K S+ DV + DG+HI
Sbjct: 499 VDMVATHGWKLLP-QLFYLQYRCDPHTGAWEHRKYSGQASKKSEPYSLHDVTYDDDGIHI 557
Query: 464 ESK 472
SK
Sbjct: 558 ASK 560
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 379 KDTCRKCSSKTGLSICW*CSTG-SRRG 456
KD C +C+++ G C C+TG SRRG
Sbjct: 447 KDDCLQCTNQIGAYKCGNCATGYSRRG 473
>SB_43933| Best HMM Match : Allexi_40kDa (HMM E-Value=7.1)
Length = 212
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 494 NSFLQVAPLIQCEPRLLPVEHHQQILRPVLLLHFLQVSLQQ*AVHAHRL 348
N+ L P I PR+ ++ HQ R + LL L L Q V+ H++
Sbjct: 156 NATLYKIPPISAHPRMANLDRHQAFSRVIALLGQLHGDLLQMDVNFHQI 204
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -3
Query: 417 KACFAAALPASILATISCPCSSVVTVKPKGCPGTFLRPTT---FTVSIGISPLP 265
K CF+ + P+ PC + +T+ PK C TFL +T FT S+ +SP P
Sbjct: 509 KPCFSPSNPSPASHLSPKPCFTSLTLSPKPC-FTFLTLSTKPCFT-SLTLSPKP 560
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 368 LIVARILAGSAAAKQALVSVGDVLLEVDGVHI 463
LIV I AG A++ + V D +LEV+G ++
Sbjct: 29 LIVREIAAGKCASRNGKLQVADRILEVNGQNL 60
>SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3)
Length = 382
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +3
Query: 147 LIEAHDQIGKIWLERGSGIDDKLIPNEFPDLIEFSKRVPRV 269
+++ + ++GK+ D++I ++ D + FS PR+
Sbjct: 23 VLQTYSKLGKLLCRGKRAFSDRIIRGKYQDYVAFSANFPRI 63
>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
Length = 465
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 374 VARILAGSAAAKQALVSVGDVLLEVDGVHIE 466
++ I+ GSAA + + GD++LEV+G IE
Sbjct: 33 ISDIVKGSAAEGVSNLQPGDIILEVNGKSIE 63
>SB_33963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 356 EHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHIESKEQ 478
E + I+ ++ + A A + GDVL+ VDG IES +Q
Sbjct: 227 EMDKFIMVDVITPKSPADLAGLHKGDVLIAVDGQKIESLKQ 267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,000,918
Number of Sequences: 59808
Number of extensions: 487223
Number of successful extensions: 1091
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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